append_md_snakemake: Append metadata to compilation files

In metamaden/rmpipeline: Process DNAm array IDATs into database files

Append metadata to compilation files

Description

Append aggregate metadata to compilation files. This step follows formation of the compilation files (e.g. rule 'get_rg_compilations', etc.) and metadata files (e.g. rule 'do_mdmap', etc.).

Usage

append_md_snakemake(
  files.dname = "recount-methylation-files",
  md.dname = "metadata",
  comp.dname = "compilations"
)

Arguments

files.dname	Files dir name for instance ("recount-methylation-files")
md.dname	Metadata dir name ("metadata"), contained at files.dname.
comp.dname	Compilations dir name ("compilations"), contained at files.dname.

Value

NULL, stores new composite metadata table.

metamaden/rmpipeline documentation built on Jan. 12, 2023, 3:20 p.m.