get_rg_dtables: Get compiled data tables of red and green signals
In metamaden/rmpipeline: Process DNAm array IDATs into database files
View source: R/snakemake_functions.R
get_rg_dtables R Documentation
Get compiled data tables of red and green signals
Description
Generates the data tables compiling DNAm red and green signals
from downloaded, and validated, IDATs. Makes two tables, one for
each channel type. This is called by the rules 'get_rg_compilations'
and 'run_dnam_pipeline'.
Usage
get_rg_dtables(
files.dname = "recount-methylation-files",
comp.dname = "compilations"
)
Arguments
files.dname
Name of the instance files directory.
comp.dname
Name of the instance compilations directory.
Value
NULL, generates data tables as side effect
metamaden/rmpipeline documentation built on Jan. 12, 2023, 3:20 p.m.
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View source: R/snakemake_functions.R
| get_rg_dtables | R Documentation |
Get compiled data tables of red and green signals
Description
Generates the data tables compiling DNAm red and green signals from downloaded, and validated, IDATs. Makes two tables, one for each channel type. This is called by the rules 'get_rg_compilations' and 'run_dnam_pipeline'.
Usage
get_rg_dtables( files.dname = "recount-methylation-files", comp.dname = "compilations" )
Arguments
files.dname |
Name of the instance files directory. |
comp.dname |
Name of the instance compilations directory. |
Value
NULL, generates data tables as side effect
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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