check_h5_database: Check DNAm data contained in an HDF5 database
In metamaden/rmpipeline: Process DNAm array IDATs into database files
View source: R/snakemake_functions.R
check_h5_database R Documentation
Check DNAm data contained in an HDF5 database
Description
Checks DNAm data stored in an HDF5 database. Uses a GEO lookup to grab
data for data validation.
Usage
check_h5_database(
comppath = file.path("recount-methylation-files", "compilations")
)
Arguments
comppath
Path to compilation files for the 'recountmethylation' instance.
Value
Returns NULL, displayes messages showing outcome of h5 db checks.
metamaden/rmpipeline documentation built on Jan. 12, 2023, 3:20 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/snakemake_functions.R
| check_h5_database | R Documentation |
Check DNAm data contained in an HDF5 database
Description
Checks DNAm data stored in an HDF5 database. Uses a GEO lookup to grab data for data validation.
Usage
check_h5_database(
comppath = file.path("recount-methylation-files", "compilations")
)
Arguments
comppath |
Path to compilation files for the 'recountmethylation' instance. |
Value
Returns NULL, displayes messages showing outcome of h5 db checks.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.