get_h5db_gr: Get HDF5 database of DNAm fractions, from h5se rg data

View source: R/snakemake_functions.R

get_h5db_grR Documentation

Get HDF5 database of DNAm fractions, from h5se rg data

Description

Get HDF5 database of DNAm fractions, from h5se rg data

Usage

get_h5db_gr(
  files.dpath = "recount-methylation-files",
  comp.dname = "compilations",
  ngsm.block = 50
)

Arguments

files.dpath

Path to instance files directory.

comp.dname

Name of compilations directory.

ngsm.block

Number of GSM IDs per processed data block.

Value

NULL, generates an h5 gr database file as side effect.


metamaden/rmpipeline documentation built on Jan. 12, 2023, 3:20 p.m.