get_h5db_rg: Get HDF5 database of red/green signals, from compilation data...
In metamaden/rmpipeline: Process DNAm array IDATs into database files
View source: R/snakemake_functions.R
get_h5db_rg R Documentation
Get HDF5 database of red/green signals, from compilation data tables
Description
Generates and HDF5 database of compiled red and green signals. Uses
data tables previously generated using 'get_rg_dtables' and 'dtables_rg'.
This is called by the rules 'get_h5db_rg' and 'run_dnam_pipeline'.
Usage
get_h5db_rg(
files.dpath = "recount-methylation-files",
comp.dname = "compilations",
ngsm.block = 50
)
Arguments
files.dpath
Path to instance files directory.
comp.dname
Name of compilations directory.
ngsm.block
Number of GSM IDs per processed data block.
Value
NULL, generates an h5 rg database file as side effect.
metamaden/rmpipeline documentation built on Jan. 12, 2023, 3:20 p.m.
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View source: R/snakemake_functions.R
| get_h5db_rg | R Documentation |
Get HDF5 database of red/green signals, from compilation data tables
Description
Generates and HDF5 database of compiled red and green signals. Uses data tables previously generated using 'get_rg_dtables' and 'dtables_rg'. This is called by the rules 'get_h5db_rg' and 'run_dnam_pipeline'.
Usage
get_h5db_rg( files.dpath = "recount-methylation-files", comp.dname = "compilations", ngsm.block = 50 )
Arguments
files.dpath |
Path to instance files directory. |
comp.dname |
Name of compilations directory. |
ngsm.block |
Number of GSM IDs per processed data block. |
Value
NULL, generates an h5 rg database file as side effect.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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