countsForAllGenes: Counts for all genes in bam data

In mi2-warsaw/sequencingExplainer: Package directRNAExplorer is an R package for dealing with the RNA sequencing data.

Description

Function countsForAllGenes computes counts for all genes or gene parts in chosen gene data dictionary in the bam data set.

Usage

countsForAllGenes(data, geneData = directRNAExplorer::Araport11,
  genePart = "gene", range = 0)

Arguments

data	Bam data set
geneData	Data frame with positions of all genes and their parts, by default we use a Araport11.
genePart	The part of gene we want to count apperances in data. By default we count apperances for whole gene.
range	The distance behind the longest 3'UTR where we look for counts.

mi2-warsaw/sequencingExplainer documentation built on May 17, 2019, 4:33 p.m.