ksDistributionTest: ksDistributionTest

In mi2-warsaw/sequencingExplainer: Package directRNAExplorer is an R package for dealing with the RNA sequencing data.

Description

Kolmogorov-Smirnov test for gene from two datasets

Usage

ksDistributionTest(data1, data2, gene,
  geneData = directRNAExplorer::TAIR10_genes, genePart = "gene")

Arguments

data1	First data set which contains informations about selected gene.
data2	Second data set which contains informations about selected gene.
gene	Gene name.
geneData	Data frame with positions of all genes and their names, by default we use a TAIR10_genes
genePart	The part of gene we want to test. By default we conduct test for whole gene.

Examples

library(directRNAExplorer)
databrm <- brmDataChromosome1[brmDataChromosome1$pos >2002000 & brmDataChromosome1$pos < 2018000,]
datawt <- dataChromosome1[dataChromosome1$pos >2002000 & dataChromosome1$pos < 2018000,]
ksDistributionTest(databrm, datawt, gene = "AT1G06560")

mi2-warsaw/sequencingExplainer documentation built on May 17, 2019, 4:33 p.m.