plotGeneDistribution: plotGeneDistribution

In mi2-warsaw/sequencingExplainer: Package directRNAExplorer is an R package for dealing with the RNA sequencing data.

Description

Plot of distribution on selected gene

Usage

plotGeneDistribution(gene, bamDataFrame,
  geneData = directRNAExplorer::TAIR10_genes, range = 0,
  genePart = "gene", ...)

Arguments

gene	Character with gene name.
bamDataFrame	Data frame converted to R using bamToR() function.
geneData	Data frame with positions of all genes and their names, by default we use a TAIR10_genes.
range	How many nucleotide before start and after stop we include to genes.
genePart	The part of gene we want to visualize.
...	Optional arguments.

Examples

library(directRNAExplorer)
data <- brmDataChromosome1[brmDataChromosome1$pos >2002000 & brmDataChromosome1$pos < 2018000,]
plotGeneDistribution("AT1G06560", data, genePart="three_prime_UTR")

mi2-warsaw/sequencingExplainer documentation built on May 17, 2019, 4:33 p.m.