Description Usage Arguments Examples
Counts how many sequencing points were at known genes
1 2 | matchToGene(positions, start, stop, geneName, strandData, strand = "sense",
range = 0)
|
positions |
Positions from sequencing and informations about strand. |
start |
Gene start index. |
stop |
Gene stop index. |
geneName |
Gene name. |
strandData |
Vector with information that gene is on |
strand |
On which strand we want to compute statistics, we can compute statistics on the |
range |
How many nucleotide before |
1 2 3 4 5 6 7 | ## Not run:
library(directRNAExplorer)
data <- dataChromosome1
dic <- TAIR10_genes
matchToGene(positions=unique(data$pos), start=dic$V4, stop=dic$V5, geneName=dic$id)
## End(Not run)
|
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