matchToGene: matchToGene

In mi2-warsaw/sequencingExplainer: Package directRNAExplorer is an R package for dealing with the RNA sequencing data.

Description

Counts how many sequencing points were at known genes

Usage

matchToGene(positions, start, stop, geneName, strandData, strand = "sense",
  range = 0)

Arguments

positions	Positions from sequencing and informations about strand.
start	Gene start index.
stop	Gene stop index.
geneName	Gene name.
strandData	Vector with information that gene is on sense or antisense strand.
strand	On which strand we want to compute statistics, we can compute statistics on the sense or antisense strand.
range	How many nucleotide before start and after stop we include to genes.

Examples

## Not run: 
library(directRNAExplorer)
data <- dataChromosome1
dic <- TAIR10_genes
matchToGene(positions=unique(data$pos), start=dic$V4, stop=dic$V5, geneName=dic$id)

## End(Not run)

mi2-warsaw/sequencingExplainer documentation built on May 17, 2019, 4:33 p.m.