plotCoverage: plotCoverage

In mi2-warsaw/sequencingExplainer: Package directRNAExplorer is an R package for dealing with the RNA sequencing data.

Description

Coverage plot for chosen part of RNA sequence

Usage

plotCoverage(bamDataFrame, chromosome, start, stop, type = "histogram", ...)

Arguments

bamDataFrame	Data frame converted to R using bamToR() function.
chromosome	Number of chosen chromosome.
start	First position in gene/exon/three prime utr etc.
stop	Last position in gene/exon/three prime utr etc.
type	Type of the plot, by default histogram.
...	Optional arguments.

Examples

library(directRNAExplorer)
data <- brmDataChromosome1[brmDataChromosome1$pos >2002000 & brmDataChromosome1$pos < 2018000,]
plotCoverage(data, chromosome = 1, start =2002610 , stop = 2004510)

mi2-warsaw/sequencingExplainer documentation built on May 17, 2019, 4:33 p.m.