countsPerGene: Counts for gene

In mi2-warsaw/sequencingExplainer: Package directRNAExplorer is an R package for dealing with the RNA sequencing data.

Description

Function countsPerGene create a list with three data frames containing counts for gene or choosen gene part.

Usage

countsPerGene(datawt = list(), databrm = list(), datac = list(), gene,
  geneData = directRNAExplorer::TAIR10_genes, genePart = "gene",
  type = "unique")

Arguments

datawt	a list of bamDataFrames received after use the bamToR function containing information from the wt individual
databrm	a list of bamDataFrames received after use the bamToR function containing information from the brm individual
datac	a list of bamDataFrames received after use the bamToR function containing information from the c individual
gene	a character to indicate for which gene we compute the counts
geneData	a data.frame containing informations about genes
genePart	a character to indicate for what gene part we want to compute the counts, by default it is the "gene"
type	a character to indicate whether we count unique counts or all of them

mi2-warsaw/sequencingExplainer documentation built on May 17, 2019, 4:33 p.m.