plotGeneComparisonDistribution: plotGeneComparisonDistribution

In mi2-warsaw/sequencingExplainer: Package directRNAExplorer is an R package for dealing with the RNA sequencing data.

Description

Plot of distribution of two samples on selected gene

Usage

plotGeneComparisonDistribution(gene, data1, data2,
  geneData = directRNAExplorer::TAIR10_genes, range = 0,
  genePart = "gene", adjust = 1, stat = "density", geneName = NULL, ...)

Arguments

gene	Character with gene name.
data1	Data frame converted to R using bamToR() function, corresponding to the first sample.
data2	Data frame converted to R using bamToR() function, corresponding to the second sample.
geneData	Data frame with positions of all genes and their names, by default we use a TAIR10_genes.
range	How many nucleotide before start and after stop we include to genes.
genePart	The part of gene we want to visualize.
adjust	A multiplicate bandwidth adjustment.
stat	A type of plot.
geneName	A name of presented gene.
...	Optional arguments.

mi2-warsaw/sequencingExplainer documentation built on May 17, 2019, 4:33 p.m.