| $.Assay |
Man page
|
| $.Assay5 |
Man page
|
| $.FOV |
Man page
|
| $.JackStrawData |
Man page
|
| $.Seurat |
Man page
|
| $.SeuratCommand |
Man page
|
| $.StdAssay |
Man page
|
| $<-.Assay |
Man page
|
| $<-.Assay5 |
Man page
|
| $<-.Seurat |
Man page
|
| $<-.StdAssay |
Man page
|
| %!NA% |
Man page
|
| %!na% |
Man page
|
| %NA% |
Man page
|
| %iff% |
Man page
|
| %na% |
Man page
|
| %||% |
Man page
|
| .AddMetaData |
Source code
|
| .AddSegmentation |
Source code
|
| .AssayClass |
Man page
Source code
|
| .AssayClass.Assay5T |
Source code
|
| .AssayClass.StdAssay |
Man page
Source code
|
| .AssayClass.default |
Man page
Source code
|
| .AutoRadius |
Source code
|
| .BPMatrixMode |
Man page
Source code
|
| .BboxDF |
Source code
|
| .BboxIntersect |
Source code
|
| .CalcN |
Man page
Source code
|
| .CalcN.Assay |
Source code
|
| .CalcN.StdAssay |
Source code
|
| .CalcN.default |
Source code
|
| .CheckDimnames |
Source code
|
| .CheckFmargin |
Man page
Source code
|
| .CheckKey |
Source code
|
| .CheckNames |
Source code
|
| .ClassPkg |
Man page
Source code
|
| .ClassPkg.DelayedArray |
Man page
Source code
|
| .ClassPkg.R6 |
Man page
Source code
|
| .ClassPkg.R6ClassGenerator |
Man page
Source code
|
| .ClassPkg.default |
Man page
Source code
|
| .Cmargin |
Source code
|
| .Collections |
Man page
Source code
|
| .Contains |
Man page
Source code
|
| .CreateStdAssay |
Man page
Source code
|
| .CreateStdAssay.Matrix |
Man page
Source code
|
| .CreateStdAssay.default |
Man page
Source code
|
| .CreateStdAssay.list |
Man page
Source code
|
| .CreateStdAssay.matrix |
Man page
|
| .Crop |
Source code
|
| .DefaultFOV |
Man page
Source code
|
| .Deprecate |
Man page
Source code
|
| .DiskLoad |
Man page
Source code
|
| .DiskLoad.10xMatrixH5 |
Man page
Source code
|
| .DiskLoad.AnnDataMatrixH5 |
Man page
Source code
|
| .DiskLoad.DelayedMatrix |
Man page
Source code
|
| .DiskLoad.H5ADMatrix |
Man page
Source code
|
| .DiskLoad.HDF5Matrix |
Man page
Source code
|
| .DiskLoad.IterableMatrix |
Man page
Source code
|
| .DiskLoad.MatrixDir |
Man page
Source code
|
| .DiskLoad.MatrixH5 |
Man page
Source code
|
| .DiskLoad.TileDBMatrix |
Man page
Source code
|
| .DiskLoad.default |
Man page
Source code
|
| .DollarNames.Assay |
Man page
Source code
|
| .DollarNames.Assay5 |
Man page
|
| .DollarNames.FOV |
Source code
|
| .DollarNames.JackStrawData |
Man page
|
| .DollarNames.Seurat |
Man page
|
| .DollarNames.SeuratCommand |
Man page
|
| .DollarNames.StdAssay |
Man page
Source code
|
| .FeatureRank |
Source code
|
| .FileMove |
Man page
Source code
|
| .FilePath |
Man page
Source code
|
| .FilePath.DelayedMatrix |
Man page
Source code
|
| .FilePath.IterableMatrix |
Man page
Source code
|
| .FilePath.default |
Man page
Source code
|
| .FilterCells |
Source code
|
| .FilterObjects |
Man page
Source code
|
| .FindObject |
Man page
Source code
|
| .FiniteCentroids |
Source code
|
| .GetLayerData2 |
Source code
|
| .GetMethod |
Man page
Source code
|
| .IsDataFrame |
Source code
|
| .IsFutureSeurat |
Man page
Source code
|
| .IsNull |
Source code
|
| .Key |
Source code
|
| .MARGIN |
Man page
Source code
|
| .MARGIN.Assay5T |
Source code
|
| .MARGIN.CsparseMatrix |
Source code
|
| .MARGIN.RsparseMatrix |
Source code
|
| .MARGIN.default |
Source code
|
| .MakeNames |
Source code
|
| .Misc |
Source code
|
| .OrderCells |
Source code
|
| .OverBbox |
Source code
|
| .Overlay |
Source code
|
| .Oxford |
Source code
|
| .PkgClasses |
Source code
|
| .PrepLayerData2 |
Source code
|
| .PropagateList |
Man page
Source code
|
| .RandomKey |
Man page
|
| .RenameFeatures |
Source code
|
| .RleIndex |
Source code
|
| .RoundVersion |
Source code
|
| .SelectFeatures |
Man page
Source code
|
| .SelectFeatures.StdAssay |
Source code
|
| .SelectFeatures.list |
Man page
Source code
|
| .SparseSlots |
Man page
Source code
|
| .SparseSlots.CsparseMatrix |
Man page
Source code
|
| .SparseSlots.RsparseMatrix |
Man page
Source code
|
| .SparseSlots.spam |
Man page
Source code
|
| .SubobjectAssign |
Source code
|
| .Subobjects |
Man page
Source code
|
| .VFLayers |
Source code
|
| .VFMethods |
Source code
|
| .VFMethodsLayers |
Source code
|
| .Vowels |
Source code
|
| .head |
Source code
|
| .onAttach |
Source code
|
| .onLoad |
Source code
|
| .tail |
Source code
|
| AddMetaData |
Man page
Source code
|
| AddMetaData-StdAssay |
Man page
|
| AddMetaData.Assay |
Man page
Source code
|
| AddMetaData.Assay5 |
Man page
|
| AddMetaData.Seurat |
Man page
|
| AddMetaData.StdAssay |
Man page
|
| AddSamples |
Man page
|
| Angles |
Man page
|
| Assays |
Man page
Source code
|
| Assays.Seurat |
Man page
Source code
|
| AttachDeps |
Source code
|
| Boundaries |
Man page
Source code
|
| Boundaries.FOV |
Man page
Source code
|
| CalcN5 |
Source code
|
| CastAssay |
Man page
Source code
|
| CastAssay-StdAssay |
Man page
|
| CastAssay.Assay5 |
Man page
|
| CastAssay.Seurat |
Source code
|
| CastAssay.StdAssay |
Man page
Source code
|
| Cells |
Man page
Source code
|
| Cells-StdAssay |
Man page
|
| Cells.Assay5 |
Man page
|
| Cells.Centroids |
Man page
Source code
|
| Cells.DimReduc |
Man page
Source code
|
| Cells.FOV |
Man page
Source code
|
| Cells.Graph |
Source code
|
| Cells.Neighbor |
Man page
Source code
|
| Cells.Segmentation |
Man page
Source code
|
| Cells.Seurat |
Source code
|
| Cells.SpatialImage |
Man page
Source code
|
| Cells.StdAssay |
Man page
Source code
|
| Cells.default |
Man page
Source code
|
| CellsByIdentities |
Man page
Source code
|
| CellsByImage |
Man page
Source code
|
| Centroids-class |
Man page
|
| Centroids-methods |
Man page
|
| CheckDots |
Man page
Source code
|
| CheckDuplicateCellNames |
Source code
|
| CheckFeaturesNames |
Man page
Source code
|
| CheckGC |
Man page
Source code
|
| CheckLayersName |
Man page
Source code
|
| CheckMatrix |
Man page
Source code
|
| CheckMatrix.dMatrix |
Man page
Source code
|
| CheckMatrix.default |
Man page
Source code
|
| CheckMatrix.lMatrix |
Man page
Source code
|
| ClassKey |
Man page
Source code
|
| Collections |
Source code
|
| Command |
Man page
Source code
|
| Command.Seurat |
Man page
Source code
|
| CreateAssay5Object |
Man page
Source code
|
| CreateAssayObject |
Man page
Source code
|
| CreateCentroids |
Man page
Source code
|
| CreateCentroids.Centroids |
Source code
|
| CreateCentroids.default |
Source code
|
| CreateDimReducObject |
Man page
Source code
|
| CreateFOV |
Man page
Source code
|
| CreateFOV.Centroids |
Man page
Source code
|
| CreateFOV.Segmentation |
Man page
|
| CreateFOV.data.frame |
Man page
Source code
|
| CreateFOV.list |
Man page
Source code
|
| CreateMolecules |
Man page
Source code
|
| CreateMolecules.Molecules |
Man page
Source code
|
| CreateMolecules.NULL |
Man page
Source code
|
| CreateMolecules.data.frame |
Man page
Source code
|
| CreateSegmentation |
Man page
Source code
|
| CreateSegmentation.Segmentation |
Man page
Source code
|
| CreateSegmentation.data.frame |
Man page
Source code
|
| CreateSeuratObject |
Man page
Source code
|
| CreateSeuratObject.Assay |
Man page
Source code
|
| CreateSeuratObject.Assay5 |
Man page
|
| CreateSeuratObject.default |
Man page
Source code
|
| Crop |
Man page
Source code
|
| Crop.FOV |
Man page
Source code
|
| Crop.Molecules |
Source code
|
| DefaultAssay |
Man page
Source code
|
| DefaultAssay-StdAssay |
Man page
|
| DefaultAssay.Assay |
Man page
Source code
|
| DefaultAssay.Assay5 |
Man page
|
| DefaultAssay.DimReduc |
Man page
Source code
|
| DefaultAssay.Graph |
Man page
Source code
|
| DefaultAssay.Seurat |
Man page
Source code
|
| DefaultAssay.SeuratCommand |
Man page
Source code
|
| DefaultAssay.SpatialImage |
Man page
Source code
|
| DefaultAssay.StdAssay |
Man page
Source code
|
| DefaultAssay<- |
Man page
|
| DefaultAssay<-.Assay |
Man page
|
| DefaultAssay<-.Assay5 |
Man page
|
| DefaultAssay<-.DimReduc |
Man page
|
| DefaultAssay<-.Graph |
Man page
|
| DefaultAssay<-.Seurat |
Man page
|
| DefaultAssay<-.SpatialImage |
Man page
|
| DefaultAssay<-.StdAssay |
Man page
|
| DefaultBoundary |
Man page
Source code
|
| DefaultBoundary.FOV |
Man page
Source code
|
| DefaultBoundary<- |
Man page
|
| DefaultBoundary<-.FOV |
Man page
|
| DefaultDimReduc |
Man page
Source code
|
| DefaultFOV |
Man page
Source code
|
| DefaultFOV.Seurat |
Man page
Source code
|
| DefaultFOV<- |
Man page
|
| DefaultFOV<-.Seurat |
Man page
|
| DefaultImage |
Source code
|
| DefaultLayer |
Man page
Source code
|
| DefaultLayer-StdAssay |
Man page
|
| DefaultLayer.Assay |
Man page
Source code
|
| DefaultLayer.Assay5 |
Man page
|
| DefaultLayer.StdAssay |
Man page
Source code
|
| DefaultLayer<- |
Man page
|
| DefaultLayer<-.Assay5 |
Man page
|
| DefaultLayer<-.StdAssay |
Man page
|
| Degrees |
Man page
Source code
|
| Distances |
Man page
Source code
|
| Distances.Neighbor |
Man page
Source code
|
| Embeddings |
Man page
Source code
|
| Embeddings.DimReduc |
Man page
Source code
|
| Embeddings.Seurat |
Man page
Source code
|
| EmptyDF |
Man page
Source code
|
| EmptyMatrix |
Man page
Source code
|
| ExtractField |
Man page
Source code
|
| FOV-methods |
Man page
|
| FOV-validity |
Man page
|
| Features |
Man page
Source code
|
| Features.Assay |
Source code
|
| Features.Assay5 |
Man page
|
| Features.DimReduc |
Source code
|
| Features.FOV |
Man page
Source code
|
| Features.Molecules |
Man page
Source code
|
| Features.Seurat |
Source code
|
| Features.StdAssay |
Man page
Source code
|
| FetchData |
Man page
Source code
|
| FetchData.Assay |
Source code
|
| FetchData.DimReduc |
Man page
Source code
Source code
|
| FetchData.FOV |
Man page
Source code
|
| FetchData.Molecules |
Source code
|
| FetchData.Seurat |
Man page
Source code
|
| FetchData.StdAssay |
Source code
|
| FilterObjects |
Source code
|
| FindObject |
Source code
|
| GetAssayData |
Source code
|
| GetAssayData.Assay |
Source code
|
| GetAssayData.Seurat |
Source code
|
| GetAssayData.StdAssay |
Source code
|
| GetImage |
Man page
Source code
|
| GetImage.Seurat |
Man page
Source code
|
| GetImage.SpatialImage |
Man page
Source code
|
| GetTissueCoordinates |
Man page
Source code
|
| GetTissueCoordinates.Centroids |
Man page
Source code
|
| GetTissueCoordinates.FOV |
Man page
Source code
|
| GetTissueCoordinates.Molecules |
Man page
Source code
|
| GetTissueCoordinates.Segmentation |
Man page
Source code
|
| GetTissueCoordinates.Seurat |
Man page
Source code
|
| GetTissueCoordinates.SpatialImage |
Man page
Source code
|
| Graph |
Man page
|
| Graph-class |
Man page
|
| GraphToNeighborHelper |
Source code
|
| Graphs |
Man page
Source code
|
| HVFInfo |
Source code
|
| HVFInfo.Assay |
Source code
|
| HVFInfo.Seurat |
Source code
|
| HVFInfo.StdAssay |
Source code
|
| Idents |
Man page
Source code
|
| Idents.Seurat |
Man page
Source code
|
| Idents<- |
Man page
|
| Idents<-.Seurat |
Man page
|
| Images |
Man page
Source code
|
| Index |
Man page
Source code
|
| Index.Neighbor |
Man page
Source code
|
| Index<- |
Man page
|
| Index<-.Neighbor |
Man page
|
| Indices |
Man page
Source code
|
| Indices.Neighbor |
Man page
Source code
|
| IsCharEmpty |
Source code
|
| IsFutureSeurat |
Man page
|
| IsGlobal |
Man page
Source code
|
| IsGlobal.DimReduc |
Man page
Source code
|
| IsGlobal.SpatialImage |
Man page
Source code
|
| IsGlobal.default |
Man page
Source code
|
| IsMatrixEmpty |
Man page
Source code
|
| IsMatrixEmpty.default |
Man page
Source code
|
| IsNamedList |
Man page
Source code
Source code
|
| IsNullPtr |
Source code
|
| IsS4List |
Man page
Source code
|
| IsSparse |
Man page
Source code
|
| JS |
Man page
Source code
|
| JS.DimReduc |
Man page
Source code
|
| JS.JackStrawData |
Man page
Source code
|
| JS<- |
Man page
|
| JS<-.DimReduc |
Man page
|
| JS<-.JackStrawData |
Man page
|
| JackStrawData |
Man page
|
| JackStrawData-class |
Man page
|
| JackStrawData-methods |
Man page
|
| JoinLayers |
Man page
Source code
|
| JoinLayers.Assay5 |
Man page
|
| JoinLayers.Seurat |
Man page
Source code
|
| JoinLayers.StdAssay |
Source code
|
| JoinSingleLayers |
Source code
|
| Key |
Man page
Source code
|
| Key.Assay |
Man page
Source code
|
| Key.Assay5 |
Man page
|
| Key.DimReduc |
Man page
|
| Key.KeyMixin |
Source code
|
| Key.Seurat |
Man page
Source code
|
| Key.SpatialImage |
Man page
Source code
|
| Key<- |
Man page
|
| Key<-.Assay |
Man page
|
| Key<-.Assay5 |
Man page
|
| Key<-.DimReduc |
Man page
|
| Key<-.SpatialImage |
Man page
|
| Keys |
Man page
Source code
|
| Keys.FOV |
Man page
Source code
|
| Keys.Seurat |
Man page
|
| LayerData |
Source code
|
| LayerData.Assay |
Source code
|
| LayerData.Seurat |
Source code
|
| LayerData.StdAssay |
Source code
|
| Layers |
Source code
|
| Layers.Assay |
Source code
|
| Layers.Seurat |
Source code
|
| Layers.StdAssay |
Source code
|
| ListToS4 |
Man page
Source code
|
| LoadSeuratRds |
Source code
|
| Loadings |
Man page
Source code
|
| Loadings.DimReduc |
Man page
Source code
|
| Loadings.Seurat |
Man page
Source code
|
| Loadings<- |
Man page
|
| Loadings<-.DimReduc |
Man page
|
| LogMap |
Man page
Source code
|
| LogMap-class |
Man page
|
| LogMap-validity |
Man page
|
| LogSeuratCommand |
Man page
Source code
|
| MatchCells |
Man page
Source code
|
| MatchCells.NULL |
Man page
Source code
|
| MatchCells.character |
Man page
Source code
|
| MatchCells.numeric |
Man page
Source code
|
| MergeSeurat |
Man page
|
| Misc |
Man page
Source code
|
| Misc-StdAssay |
Man page
|
| Misc.Assay |
Man page
|
| Misc.Assay5 |
Man page
|
| Misc.DimReduc |
Man page
|
| Misc.Seurat |
Man page
|
| Misc.StdAssay |
Man page
|
| Misc<- |
Man page
|
| Misc<-.Assay |
Man page
|
| Misc<-.Assay5 |
Man page
|
| Misc<-.DimReduc |
Man page
|
| Misc<-.Seurat |
Man page
|
| Misc<-.StdAssay |
Man page
|
| Molecules |
Man page
Source code
|
| Molecules-class |
Man page
|
| Molecules-methods |
Man page
|
| Molecules.FOV |
Man page
Source code
|
| NameIndex |
Source code
|
| Neighbor |
Man page
|
| Neighbor-class |
Man page
|
| Neighbor-methods |
Man page
|
| Neighbors |
Man page
Source code
|
| NullImage |
Source code
|
| Overlay |
Man page
|
| Overlay,Centroids,SpatialPolygons-method |
Man page
|
| Overlay,FOV,FOV-method |
Man page
|
| Overlay,FOV,Spatial-method |
Man page
|
| Overlay,FOV,SpatialPolygons-method |
Man page
|
| Overlay,Molecules,SpatialPolygons-method |
Man page
|
| Overlay,Segmentation,SpatialPolygons-method |
Man page
|
| PackageCheck |
Source code
|
| PolyVtx |
Man page
Source code
|
| Project |
Man page
Source code
|
| Project.Seurat |
Man page
Source code
|
| Project<- |
Man page
|
| Project<-.Seurat |
Man page
|
| Projected |
Source code
|
| Radians |
Man page
Source code
|
| Radius |
Man page
Source code
|
| Radius.Centroids |
Man page
Source code
|
| Radius.SpatialImage |
Man page
Source code
|
| RandomName |
Man page
Source code
|
| Reductions |
Man page
Source code
|
| RegisterSparseMatrix |
Man page
Source code
|
| RenameAssays |
Man page
Source code
|
| RenameCells |
Man page
Source code
|
| RenameCells-StdAssay |
Man page
|
| RenameCells.Assay |
Man page
Source code
|
| RenameCells.Assay5 |
Man page
|
| RenameCells.Centroids |
Man page
Source code
|
| RenameCells.DimReduc |
Man page
Source code
|
| RenameCells.FOV |
Man page
Source code
|
| RenameCells.Neighbor |
Man page
Source code
|
| RenameCells.Segmentation |
Man page
Source code
|
| RenameCells.Seurat |
Man page
Source code
|
| RenameCells.SpatialImage |
Man page
Source code
|
| RenameCells.StdAssay |
Man page
Source code
|
| RenameIdent |
Man page
|
| RenameIdents |
Man page
Source code
|
| RenameIdents.Seurat |
Man page
Source code
|
| ReorderIdent |
Man page
Source code
|
| ReorderIdent.Seurat |
Man page
Source code
|
| RowMergeMatricesList |
Source code
|
| RowMergeSparseMatrices |
Man page
Source code
|
| S4ToList |
Man page
Source code
|
| S4ToList.default |
Man page
Source code
|
| S4ToList.list |
Man page
Source code
|
| SVFInfo |
Source code
|
| SVFInfo.Assay |
Source code
|
| SVFInfo.Seurat |
Source code
|
| SaveSeuratRds |
Source code
|
| Segmentation-class |
Man page
|
| Segmentation-methods |
Man page
|
| SetAssayData |
Source code
|
| SetAssayData.Assay |
Source code
|
| SetAssayData.Seurat |
Source code
|
| SetAssayData.StdAssay |
Source code
|
| SetDimReduction |
Man page
|
| SetIdent |
Man page
Source code
|
| SetIdent.Seurat |
Man page
Source code
|
| Seurat |
Man page
|
| Seurat-class |
Man page
|
| Seurat-validity |
Man page
|
| SeuratAccess |
Man page
|
| SeuratCommand |
Man page
|
| SeuratCommand-class |
Man page
|
| SeuratObject |
Man page
|
| SeuratObject-package |
Man page
|
| Simplify |
Man page
Source code
|
| Simplify.Molecules |
Source code
|
| Simplify.Spatial |
Man page
Source code
|
| SparseEmptyMatrix |
Man page
Source code
|
| SpatialImage-methods |
Man page
|
| SpatiallyVariableFeatures |
Source code
|
| SpatiallyVariableFeatures.Assay |
Source code
|
| SpatiallyVariableFeatures.Seurat |
Source code
|
| SplitLayers |
Source code
|
| StashIdent |
Man page
Source code
|
| StashIdent.Seurat |
Man page
Source code
|
| Stdev |
Man page
Source code
|
| Stdev.DimReduc |
Man page
Source code
|
| Stdev.Seurat |
Man page
Source code
|
| StitchMatrix |
Man page
Source code
|
| StitchMatrix.IterableMatrix |
Source code
|
| StitchMatrix.default |
Source code
|
| StitchMatrix.dgCMatrix |
Source code
|
| StitchMatrix.matrix |
Source code
|
| SubsetVST |
Source code
|
| SwapClassPkg |
Source code
|
| Theta |
Man page
Source code
|
| Theta.Centroids |
Man page
Source code
|
| Tool |
Man page
Source code
|
| Tool.Seurat |
Man page
Source code
|
| Tool<- |
Man page
|
| Tool<-.Seurat |
Man page
|
| Tools |
Man page
|
| Top |
Source code
|
| UpdateAssay |
Source code
|
| UpdateClassPkg |
Source code
|
| UpdateDimReduction |
Source code
|
| UpdateJackstraw |
Source code
|
| UpdateKey |
Source code
|
| UpdateSeuratObject |
Man page
Source code
|
| UpdateSlots |
Man page
Source code
|
| ValidateDataForMerge |
Source code
|
| VariableFeatures |
Source code
|
| VariableFeatures.Assay |
Source code
|
| VariableFeatures.Seurat |
Source code
|
| VariableFeatures.StdAssay |
Source code
|
| Version |
Man page
Source code
|
| Version.Seurat |
Man page
Source code
|
| WhichCells |
Man page
Source code
|
| WhichCells.Assay |
Man page
Source code
|
| WhichCells.Seurat |
Man page
Source code
|
| [,Centroids,character,ANY,ANY-method |
Man page
|
| [,Centroids,numeric,ANY,ANY-method |
Man page
|
| [,LogMap |
Man page
|
| [,LogMap,character,character,ANY-method |
Man page
|
| [,LogMap,character,missing,ANY-method |
Man page
|
| [,LogMap,missing,character,ANY-method |
Man page
|
| [,LogMap,missing,missing,ANY-method |
Man page
|
| [,LogMap,missing,numeric,ANY-method |
Man page
|
| [,LogMap,numeric,missing,ANY-method |
Man page
|
| [,LogMap,numeric,numeric,ANY-method |
Man page
|
| [,Segmentation,ANY,ANY,ANY-method |
Man page
|
| [.Assay |
Man page
|
| [.Assay5 |
Man page
|
| [.DimReduc |
Man page
|
| [.FOV |
Man page
|
| [.Seurat |
Man page
|
| [.SeuratCommand |
Man page
|
| [.SpatialImage |
Man page
|
| [.StdAssay |
Man page
|
| [<-,Assay,character,ANY,ANY-method |
Man page
|
| [<-,Assay5,character,ANY,ANY-method |
Man page
|
| [<-,StdAssay,character,ANY,ANY-method |
Man page
|
| [[,LogMap,NULL,missing-method |
Man page
|
| [[,LogMap,character,missing-method |
Man page
|
| [[,LogMap,integer,missing-method |
Man page
|
| [[,LogMap,missing,missing-method |
Man page
|
| [[,LogMap,numeric,missing-method |
Man page
|
| [[.Assay |
Man page
|
| [[.Assay5 |
Man page
|
| [[.DimReduc |
Man page
|
| [[.FOV |
Man page
|
| [[.Seurat |
Man page
|
| [[.StdAssay |
Man page
|
| [[<-,Assay,ANY,ANY,ANY-method |
Man page
|
| [[<-,Assay,missing,missing,data.frame-method |
Man page
|
| [[<-,Assay5,ANY,ANY,ANY-method |
Man page
|
| [[<-,FOV,character,missing,Centroids-method |
Man page
|
| [[<-,FOV,character,missing,Molecules-method |
Man page
|
| [[<-,FOV,character,missing,NULL-method |
Man page
|
| [[<-,FOV,character,missing,Segmentation-method |
Man page
|
| [[<-,LogMap,character,missing,NULL-method |
Man page
|
| [[<-,LogMap,character,missing,character-method |
Man page
|
| [[<-,LogMap,character,missing,integer-method |
Man page
|
| [[<-,LogMap,character,missing,numeric-method |
Man page
|
| [[<-,Seurat |
Man page
|
| [[<-,Seurat,NULL |
Man page
|
| [[<-,Seurat,character,ANY,ANY-method |
Man page
|
| [[<-,Seurat,character,missing,Assay-method |
Man page
|
| [[<-,Seurat,character,missing,Assay5-method |
Man page
|
| [[<-,Seurat,character,missing,DimReduc-method |
Man page
|
| [[<-,Seurat,character,missing,Graph-method |
Man page
|
| [[<-,Seurat,character,missing,NULL-method |
Man page
|
| [[<-,Seurat,character,missing,Neighbor-method |
Man page
|
| [[<-,Seurat,character,missing,SeuratCommand-method |
Man page
|
| [[<-,Seurat,character,missing,SpatialImage-method |
Man page
|
| [[<-,Seurat,character,missing,StdAssay-method |
Man page
|
| [[<-,Seurat,character,missing,data.frame-method |
Man page
|
| [[<-,Seurat,character,missing,factor-method |
Man page
|
| [[<-,Seurat,character,missing,list-method |
Man page
|
| [[<-,Seurat,character,missing,vector-method |
Man page
|
| [[<-,Seurat,missing,missing,data.frame-method |
Man page
|
| [[<-,Seurat,missing,missing,list-method |
Man page
|
| [[<-,StdAssay,character,missing,NULL-method |
Man page
|
| [[<-,StdAssay,character,missing,data.frame-method |
Man page
|
| [[<-,StdAssay,character,missing,factor-method |
Man page
|
| [[<-,StdAssay,character,missing,vector-method |
Man page
|
| [[<-,StdAssay,missing,missing,NULL-method |
Man page
|
| [[<-,StdAssay,missing,missing,data.frame-method |
Man page
|
| [[<-,StdAssay,numeric,missing,ANY-method |
Man page
|
| [[<-.Seurat |
Man page
|
| \S4method{[[<-}{Seurat,character,missing,Assay} |
Man page
|
| \S4method{[[<-}{Seurat,character,missing,NULL} |
Man page
|
| `%!NA%` |
Source code
|
| `%NA%` |
Source code
|
| `%iff%` |
Source code
|
| aggregate |
Man page
|
| aggregate.FOV |
Man page
Source code
|
| aggregate.Molecules |
Man page
Source code
|
| as.Centroids |
Man page
Source code
|
| as.Centroids.Segmentation |
Man page
Source code
|
| as.Graph |
Man page
Source code
|
| as.Graph.Matrix |
Man page
Source code
|
| as.Graph.Neighbor |
Man page
Source code
|
| as.Graph.matrix |
Man page
|
| as.Neighbor |
Man page
Source code
|
| as.Neighbor.Graph |
Man page
Source code
|
| as.Segmentation |
Man page
Source code
|
| as.Segmentation.Centroids |
Man page
Source code
|
| as.Seurat |
Man page
Source code
|
| as.list.SeuratCommand |
Man page
Source code
|
| as.logical.JackStrawData |
Man page
Source code
|
| as.matrix.LogMap |
Man page
Source code
|
| as.sparse |
Man page
Source code
|
| as.sparse.Matrix |
Man page
Source code
|
| as.sparse.data.frame |
Man page
Source code
|
| as.sparse.matrix |
Man page
Source code
|
| as.sparse.ngCMatrix |
Man page
Source code
|
| colMeans,Assay-method |
Man page
|
| colMeans,Seurat-method |
Man page
|
| colMeans,StdAssay-method |
Man page
|
| colSums,Assay-method |
Man page
|
| colSums,Seurat-method |
Man page
|
| colSums,StdAssay-method |
Man page
|
| coordinates,Segmentation-method |
Man page
|
| dim.Assay |
Man page
Source code
|
| dim.Assay5 |
Man page
|
| dim.DimReduc |
Man page
Source code
|
| dim.FOV |
Source code
|
| dim.Neighbor |
Man page
Source code
|
| dim.Seurat |
Man page
Source code
|
| dim.SpatialImage |
Man page
Source code
|
| dim.StdAssay |
Man page
Source code
|
| dimnames.Assay |
Man page
Source code
|
| dimnames.Assay5 |
Man page
|
| dimnames.DimReduc |
Man page
Source code
|
| dimnames.Seurat |
Man page
Source code
|
| dimnames.StdAssay |
Man page
Source code
|
| dimnames<-.Assay |
Man page
|
| dimnames<-.Assay5 |
Man page
|
| dimnames<-.Seurat |
Man page
|
| dimnames<-.StdAssay |
Man page
|
| droplevels.LogMap |
Man page
Source code
|
| droplevels.Seurat |
Man page
Source code
|
| handlers |
Man page
|
| head.Assay |
Man page
Source code
|
| head.Assay5 |
Man page
|
| head.Seurat |
Man page
|
| head.StdAssay |
Man page
|
| intersect |
Man page
|
| intersect.LogMap |
Man page
Source code
|
| is.finite.Centroids |
Man page
|
| is.infinite.Centroids |
Man page
|
| labels.LogMap |
Man page
Source code
|
| length.Centroids |
Man page
Source code
|
| length.DimReduc |
Man page
Source code
|
| length.FOV |
Man page
Source code
|
| lengths.Centroids |
Man page
Source code
|
| lengths.Segmentation |
Man page
Source code
|
| levels.Seurat |
Man page
Source code
|
| levels<-.Seurat |
Man page
|
| merge |
Man page
|
| merge.Assay |
Man page
Source code
|
| merge.Assay5 |
Man page
|
| merge.DimReduc |
Man page
Source code
|
| merge.Seurat |
Man page
Source code
|
| merge.StdAssay |
Man page
Source code
|
| names.DimReduc |
Man page
Source code
|
| names.FOV |
Man page
Source code
|
| names.Seurat |
Man page
Source code
|
| old-assign |
Man page
|
| oldseurat |
Man page
|
| pbmc_small |
Man page
|
| plan |
Man page
|
| print |
Man page
|
| print.DimReduc |
Man page
Source code
|
| reexports |
Man page
|
| remove-object |
Man page
|
| remove-objects |
Man page
|
| rowMeans,Assay-method |
Man page
|
| rowMeans,Seurat-method |
Man page
|
| rowMeans,StdAssay-method |
Man page
|
| rowSums,Assay-method |
Man page
|
| rowSums,Seurat-method |
Man page
|
| rowSums,StdAssay-method |
Man page
|
| s4list |
Man page
|
| set-if-na |
Man page
|
| set-if-null |
Man page
|
| seurat-class |
Man page
|
| show,Assay-method |
Man page
|
| show,Centroids-method |
Man page
|
| show,DimReduc-method |
Man page
|
| show,FOV-method |
Man page
|
| show,Graph-method |
Man page
|
| show,JackStrawData-method |
Man page
|
| show,LogMap-method |
Man page
|
| show,Molecules-method |
Man page
|
| show,Neighbor-method |
Man page
|
| show,Segmentation-method |
Man page
|
| show,Seurat-method |
Man page
|
| show,SeuratCommand-method |
Man page
|
| show,SpatialImage-method |
Man page
|
| show,StdAssay-method |
Man page
|
| show,seurat-method |
Man page
|
| split,StdAssay-method |
Man page
|
| split.Assay |
Man page
Source code
|
| split.Assay5 |
Man page
|
| split.Seurat |
Man page
Source code
|
| split.StdAssay |
Man page
Source code
|
| subset |
Man page
|
| subset.Assay |
Man page
Source code
|
| subset.Assay5 |
Man page
|
| subset.Centroids |
Man page
Source code
|
| subset.DimReduc |
Man page
Source code
|
| subset.FOV |
Man page
Source code
|
| subset.Molecules |
Man page
Source code
|
| subset.Segmentation |
Man page
Source code
|
| subset.Seurat |
Man page
Source code
|
| subset.SpatialImage |
Man page
Source code
|
| subset.StdAssay |
Man page
Source code
|
| tail.Assay |
Man page
Source code
|
| tail.Assay5 |
Man page
|
| tail.Seurat |
Man page
|
| tail.StdAssay |
Man page
|
| upgrade.seurat |
Source code
|
| v5-assay-summaries |
Man page
|
| with_progress |
Man page
|
