Files in molnet-org/molnet
Predicting Differential Drug Response using Multi-Omics Networks
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/alternative_pickHardThreshold.R
R/checks.R
R/data_documentations.R
R/drug_targets.R
R/graph_combination.R
R/interaction_score.R
R/network_generation.R
R/network_reduction.R
R/pipeline_functions.R
R/settings.R
R/utilities.R
R/utils-pipe.R
README.md
cran-comments.md
data/combined_graphs_example.rda
data/differential_score_graph_example.rda
data/drug_gene_interactions.rda
data/drug_response_score_example.rda
data/drug_target_interaction_example.rda
data/drug_targets_example.rda
data/individual_graphs_example.rda
data/interaction_score_graphs_example.rda
data/interaction_score_graphs_vignette.rda
data/layers_example.rda
data/metabolite_data.rda
data/metabolite_protein_interaction.rda
data/mrna_data.rda
data/phosphoprotein_data.rda
data/protein_data.rda
inst/python_igraph_interaction_score.py
inst/requirements.txt
man/calculate_interaction_score.Rd
man/check_connection.Rd
man/check_drug_target.Rd
man/check_drug_targets_in_layers.Rd
man/check_input.Rd
man/check_layer.Rd
man/check_sensible_connections.Rd
man/chunk.Rd
man/chunk_2gether.Rd
man/combine_graphs.Rd
man/combined_graphs_example.Rd
man/corPvalueStudentParallel.Rd
man/create_unique_layer_node_ids.Rd
man/determine_drug_targets.Rd
man/differential_score.Rd
man/differential_score_graph_example.Rd
man/drug_gene_interactions.Rd
man/drug_response_score_example.Rd
man/drug_target_interaction_example.Rd
man/drug_targets_example.Rd
man/find_targets.Rd
man/generate_combined_graphs.Rd
man/generate_individual_graphs.Rd
man/generate_reduced_graph.Rd
man/get_drug_response_score.Rd
man/get_layer.Rd
man/get_layer_setting.Rd
man/graph_metrics.Rd
man/individual_graphs_example.Rd
man/install_python_dependencies.Rd
man/inter_layer_edgelist_by_id.Rd
man/inter_layer_edgelist_by_table.Rd
man/interaction_score.Rd
man/interaction_score_graphs_example.Rd
man/interaction_score_graphs_vignette.Rd
man/layers_example.Rd
man/load_interaction_score_output.Rd
man/make_connection.Rd
man/make_drug_target.Rd
man/make_layer.Rd
man/metabolite_data.Rd
man/metabolite_protein_interaction.Rd
man/molnet_settings.Rd
man/mrna_data.Rd
man/network_reduction_by_p_value.Rd
man/network_reduction_by_pickHardThreshold.Rd
man/phosphoprotein_data.Rd
man/pickHardThreshold_alternative.Rd
man/pipe.Rd
man/protein_data.Rd
man/return_errors.Rd
man/sample_size.Rd
man/scaleFreeFitIndex_alternative.Rd
man/set_cluster.Rd
man/shutdown_cluster.Rd
man/start_pipeline.Rd
man/target_edge_list.Rd
man/write_interaction_score_input.Rd
molnet.Rproj
vignettes/Molnet_Vignette.R
vignettes/Molnet_Vignette.Rmd
vignettes/Molnet_Vignette.html
vignettes/pipeline_bpmn.png
vignettes/pipeline_overview.png
