README.md

In momeara/MPStats: Tools for analyzing Morphological Profiling data

Morphological Profiling Statistics

Introduction

This is a collection of R tools for statistical modeling morphological profiling experiments aka CellPainting.

This is built on R and meant to be run from within KNIME.

Installiation

Install R packages

devtools::install_github("momeara/MPStats")
install.packages("Rserve")

Run AGM Chapter Vignette as a batch

git clone [e-mail]:momeara/MPStats.git
cd MPStats/vignettes/AGM_chapter
make clean
make run_analysis

Run AGM Chapter Vignette from within KNIME

Start Rserver in R

library(Rserve)
Rserve(args = "--vanilla")

1. Open vignettes/AGM_chapter/knime_workflows/MPStats_AGM.knar.knwf in KNIME.
2. Set the path for the plate data "parse well scores" panel
3. Click Excute All from the commandbar

momeara/MPStats documentation built on July 19, 2022, 3:34 p.m.