serialize_clusters: Write out clusters from monocle3 cell dataset

In momeara/MPStats: Tools for analyzing Morphological Profiling data

Write out clusters from monocle3 cell dataset

Description

Write out clusters from monocle3 cell dataset

Usage

serialize_clusters(
  cds,
  output_fname,
  reduction_method = c("UMAP", "tSNE", "PCA", "LSI", "Aligned"),
  verbose = FALSE
)

Arguments

cds	monocle3 cell dataset
output_fname	path to output parquet file where the clusters should be written the data has a single column [cluster_label] with values for each object
reduction_method	the reduction method for which the clusters were computed [default: UMAP]
verbose	verbose output [default: FALSE]

momeara/MPStats documentation built on July 19, 2022, 3:34 p.m.