plot_Zprime_by_dye: Plot Zprime score by Dye combination

In momeara/MPStats: Tools for analyzing Morphological Profiling data

Plot Zprime score by Dye combination

Description

This makes a plot like from the UpSetR package with two sections The upper section is a dot plot with the Zprime score on the y-axis and the dye set on the x-axis. The value for each dye set is represented by a dot at the mean for each plate and error bars as the standard error in the mean. The lower section indicates which dyes are part of the dye_set. The y-axis give each dye and and the x-axis is the dye_set lining up with the dye_set on the upper section The values are represented as dots for each dye that is in the dye set and a line from the first to the last dye in the set. Columns across both sections alternate and the rows in the bottom section alternate shading.

Usage

plot_Zprime_by_dye(Zprime_by_plate, dye_set_separator = "_", subtitle = NULL)

Arguments

Zprime_by_plate	tibble::tibble with columns dye_set : factor this should be in the order that they will be displayed the name of the dye set should be a string of the individual dyes separated by the <dye_set_separator>. Zprime : Score to be plotted should be in (-Inf, 1) where 1 is perfect, .5-1 is good, 0-0.5 is poor, and < 1 is bad plate_id : Identifiers for different plates. The Zscores should be computed separately for each plate and then these Zprime scores will be aggregated to make the plot
dye_set_separator	separator to figure out what dyes make up the dye_set variable. Default so "_"
subtitle	string subtitle for plot

Value

ggplot2 plot

dye_plot <- MPStats::plot_Zprime_by_dye(Zprime_by_plate) ggplot2::ggsave( plot=dye_plot, filename=paste0("product/Zprime_by_dye_", MPStats::date_code(), ".pdf"), width=4, height=6, useDingbats=FALSE) ggplot2::ggsave( plot=dye_plot, filename=paste0("product/Zprime_by_dye_", MPStats::date_code(), ".png"), width=4, height=6)

momeara/MPStats documentation built on July 19, 2022, 3:34 p.m.