read_well_scores: Read well scores table

In momeara/MPStats: Tools for analyzing Morphological Profiling data

Read well scores table

Description

Read well scores table

Usage

read_well_scores(input)

Arguments

input

path to well scores csv (e.g. ProbPos_CellCount_55Plates.csv) or data.frame with columns Metadata_PlateID_Nuclei : chr Metadata_WellID_Nuclei : chr Children_Cells_Count_Nuclei : num Metadata_Image_Metadata_Compound : chr Metadata_Image_Metadata_Concentration : num probPos : num probNeg : num

Value

well_scores data.frame with columns week_id : int 10 10 10 10 10 10 10 10 10 10 ... plate_ind : int 1 1 1 1 1 1 1 1 1 1 ... row : int 2 2 2 2 2 2 2 2 2 2 ... column : int 2 3 4 5 6 7 8 9 10 11 ... compound : chr "DMSO" "Cdk1/2 inhibitor (NU6102)" "Cdk1/2 inhibitor (NU6102)" ... log_dose : num -Inf 4 3.48 3 2.48 ... is_control : logi TRUE FALSE FALSE FALSE FALSE FALSE ... cell_count : num 1442 479 743 888 951 ... n_positive : int 0 0 0 0 0 0 0 0 0 303 ...

momeara/MPStats documentation built on July 19, 2022, 3:34 p.m.