API for mrc-ide/YFestimation
Estimate ecological niche and two transmission models for yellow fever in Africa.
| Global functions | |
|---|---|
| GLM_MCMC | Man page Source code |
| GLM_MCMC_step | Man page Source code |
| GLMlike | Man page Source code |
| GLMprior | Man page Source code |
| GLMproposal | Man page Source code |
| Make_aggregate_pop_vc | Man page Source code |
| Make_aggregate_pop_vc_3d | Man page Source code |
| Make_pop3d_Ptot2d_Pprop3d | Man page Source code |
| R0_calculate_seroprevalence | Man page Source code |
| R0_recurrence_seroprev | Man page Source code |
| R0_recurrence_seroprev_survey | Man page Source code |
| R0_recurrence_seroprev_whole | Man page Source code |
| SEROlike | Man page Source code |
| SEROlike_onesurvey | Man page Source code |
| SEROprior | Man page Source code |
| SEROproposal | Man page Source code |
| SEROpseudoprior | Man page Source code |
| Sero_Gibbs_MCMC | Man page Source code |
| Sero_Gibbs_MCMC_model_step | Man page Source code |
| Sero_Gibbs_MCMC_parameter_step | Man page Source code |
| Sero_Gibbs_MCMC_step | Man page Source code |
| YFestimation | Man page |
| YFestimation-package | Man page |
| add_1940_1950 | Man page Source code |
| calc_incidence_vac_general | Man page Source code |
| calc_pop_moments | Man page Source code |
| calc_pop_moments_agg | Man page Source code |
| calc_t0_vac_africa | Man page Source code |
| calculate_bootstrap_Bayes | Man page Source code |
| calculate_hpd | Man page Source code |
| create_R0_lookup | Man page Source code |
| create_pop30_agg_vc30_agg | Man page Source code |
| create_pop_at_survey | Man page Source code |
| fit_glm | Man page Source code |
| foi_calculate_seroprevalence | Man page Source code |
| fun_calcPred | Man page Source code |
| fun_calc_pdetect_multi_both | Man page Source code |
| fun_calc_transmission_Africa | Man page Source code |
| get_chains | Man page Source code |
| get_pop_data_3d | Man page Source code |
| hpd_out | Man page Source code |
| import_pop_data_LS2014 | Man page Source code |
| import_pop_data_LS2017 | Man page Source code |
| launch_env_dat | Man page Source code |
| mean_fun | Man page Source code |
| plot_glm_map | Man page Source code |
| plot_prior_post | Man page Source code |
| plot_sero_predictions | Man page Source code |
| plot_transmission_intensity | Man page Source code |
| process_serology | Man page Source code |
| setup_modelprior | Man page Source code |
| setup_pseudoprior | Man page Source code |
| transform_into_vc3d | Man page Source code |
