R0_calculate_seroprevalence: function to calculate aggregated seroprevalence at survey in...

In mrc-ide/YFestimation: Estimate ecological niche and two transmission models for yellow fever in Africa.

Description

function to calculate aggregated seroprevalence at survey in R0 model

Usage

R0_calculate_seroprevalence(index_survey, R0, foi_const = 0, t0_vac,
  dim_year, dim_age, study_years, p_at_survey_3d, P_tot_survey_2d,
  inc_v3d_agg, age_groups, pop_moments_agg, vcfac_arg = 1, vac_eff_arg)

Arguments

index_survey	index of serological survey
R0	value of R0 for survey
foi_const	constant force of infection to add to R0 model, defaults to 0
t0_vac	time of vaccination, vector
dim_year	years of interest
dim_age	ages of interest
study_years	years of sero surveys, vector
p_at_survey_3d	population proportion at survey as an array
P_tot_survey_2d	population total at surveys
inc_v3d_agg	incidence of vacciantion at surveys
age_groups	age groups in survey
pop_moments_agg	aggregated population moments at surveys
vcfac_arg	vaccine coverage factor, defaults to 1
vac_eff_arg	vaccine efficacy

Value

seroprevalence at age groups

mrc-ide/YFestimation documentation built on March 13, 2021, 1:40 p.m.