Description Usage Arguments Value
View source: R/SERO_productspace_mcmc_functions.R
Likelihood distribution for Sero
1 2 3 | SEROlike(param, seroout, foi_const_surv, vc_agg3d, pop_agg3d,
pop_moments_agg, dim_year, dim_age, p_at_survey, P_tot_survey,
inc_v3d_agg, model_type, ign)
|
param |
vector of parameters for seroprevalence |
seroout |
processed serology data |
foi_const_surv |
vector of additional foi for each survey (R0 model) |
vc_agg3d |
aggregated vaccination array |
pop_agg3d |
aggregated population array |
pop_moments_agg |
population moments aggregated |
dim_year |
years of interest |
dim_age |
ages of interest |
p_at_survey |
population proportion at time of serological survey |
P_tot_survey |
total population at time of serological survey |
inc_v3d_agg |
the incidence of vaccination (aggregated) |
model_type |
either "R0" or "Foi" |
ign |
indices of surveys to ignore in the likelihood- useful for bug hunting |
log likelihood
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