Files in mrc-ide/YFestimation
Estimate ecological niche and two transmission models for yellow fever in Africa.
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
Licenses/GNU GPL v3
NAMESPACE
R/Foi_model_functions.R
R/GLM_mcmc_functions.R
R/R0_model_functions.R
R/SERO_productspace_mcmc_functions.R
R/Setup_functions.R
R/YFestimation.R
R/data_setup_functions.R
R/diagnostic_functions.R
R/transmission_functions.R
README.Rmd
README.md
YFestimation.Rproj
man/GLM_MCMC.Rd
man/GLM_MCMC_step.Rd
man/GLMlike.Rd
man/GLMprior.Rd
man/GLMproposal.Rd
man/Make_aggregate_pop_vc.Rd
man/Make_aggregate_pop_vc_3d.Rd
man/Make_pop3d_Ptot2d_Pprop3d.Rd
man/R0_calculate_seroprevalence.Rd
man/R0_recurrence_seroprev.Rd
man/R0_recurrence_seroprev_survey.Rd
man/R0_recurrence_seroprev_whole.Rd
man/SEROlike.Rd
man/SEROlike_onesurvey.Rd
man/SEROprior.Rd
man/SEROproposal.Rd
man/SEROpseudoprior.Rd
man/Sero_Gibbs_MCMC.Rd
man/Sero_Gibbs_MCMC_model_step.Rd
man/Sero_Gibbs_MCMC_parameter_step.Rd
man/Sero_Gibbs_MCMC_step.Rd
man/YFestimation.Rd
man/add_1940_1950.Rd
man/calc_incidence_vac_general.Rd
man/calc_pop_moments.Rd
man/calc_pop_moments_agg.Rd
man/calc_t0_vac_africa.Rd
man/calculate_bootstrap_Bayes.Rd
man/calculate_hpd.Rd
man/create_R0_lookup.Rd
man/create_pop30_agg_vc30_agg.Rd
man/create_pop_at_survey.Rd
man/fit_glm.Rd
man/foi_calculate_seroprevalence.Rd
man/fun_calcPred.Rd
man/fun_calc_pdetect_multi_both.Rd
man/fun_calc_transmission_Africa.Rd
man/get_chains.Rd
man/get_pop_data_3d.Rd
man/hpd_out.Rd
man/import_pop_data_LS2014.Rd
man/import_pop_data_LS2017.Rd
man/launch_env_dat.Rd
man/mean_fun.Rd
man/plot_glm_map.Rd
man/plot_prior_post.Rd
man/plot_sero_predictions.Rd
man/plot_transmission_intensity.Rd
man/process_serology.Rd
man/setup_modelprior.Rd
man/setup_pseudoprior.Rd
man/transform_into_vc3d.Rd
vignettes/glm_estimation_vignette.Rmd
vignettes/processing_glm_estimation_vignette.Rmd
vignettes/processing_sero_estimation_vignette.Rmd
vignettes/sero_estimation_vignette.Rmd
vignettes/transmission-intensity-estimates.Rmd
