create_R0_lookup: function to calculate aggregated seroprevalence at survey in...

In mrc-ide/YFestimation: Estimate ecological niche and two transmission models for yellow fever in Africa.

Description

function to calculate aggregated seroprevalence at survey in R0 model

Usage

create_R0_lookup(dim_adm, dat, dim_year, dim_age, p_prop_3d, P_tot_2d,
  inc_v3d, pop_moments_whole, pop_moments_agg, vac_eff_arg = 1,
  granularity = "coarse")

Arguments

dim_adm	admin 1 units
dat	data on environment and occurrence
dim_year	years of interest
dim_age	ages of interest
inc_v3d	incidence of vacciantion
pop_moments_whole	popualtion moments
pop_moments_agg	aggregated population moments
vac_eff_arg	vaccine efficacy
granularity	how many intervals in R0 values, defaults to "coarse"
p_at_survey_3d	population proportion as an array
P_tot_survey_2d	population total
vcfac_arg	vaccine coverage factor, defaults to 1

Value

file of R0 related to number of infections over the who time period

mrc-ide/YFestimation documentation built on March 13, 2021, 1:40 p.m.