API for mrc-ide/YFestimation
Estimate ecological niche and two transmission models for yellow fever in Africa.

Global functions
GLM_MCMC Man page Source code
GLM_MCMC_step Man page Source code
GLMlike Man page Source code
GLMprior Man page Source code
GLMproposal Man page Source code
Make_aggregate_pop_vc Man page Source code
Make_aggregate_pop_vc_3d Man page Source code
Make_pop3d_Ptot2d_Pprop3d Man page Source code
R0_calculate_seroprevalence Man page Source code
R0_recurrence_seroprev Man page Source code
R0_recurrence_seroprev_survey Man page Source code
R0_recurrence_seroprev_whole Man page Source code
SEROlike Man page Source code
SEROlike_onesurvey Man page Source code
SEROprior Man page Source code
SEROproposal Man page Source code
SEROpseudoprior Man page Source code
Sero_Gibbs_MCMC Man page Source code
Sero_Gibbs_MCMC_model_step Man page Source code
Sero_Gibbs_MCMC_parameter_step Man page Source code
Sero_Gibbs_MCMC_step Man page Source code
YFestimation Man page
YFestimation-package Man page
add_1940_1950 Man page Source code
calc_incidence_vac_general Man page Source code
calc_pop_moments Man page Source code
calc_pop_moments_agg Man page Source code
calc_t0_vac_africa Man page Source code
calculate_bootstrap_Bayes Man page Source code
calculate_hpd Man page Source code
create_R0_lookup Man page Source code
create_pop30_agg_vc30_agg Man page Source code
create_pop_at_survey Man page Source code
fit_glm Man page Source code
foi_calculate_seroprevalence Man page Source code
fun_calcPred Man page Source code
fun_calc_pdetect_multi_both Man page Source code
fun_calc_transmission_Africa Man page Source code
get_chains Man page Source code
get_pop_data_3d Man page Source code
hpd_out Man page Source code
import_pop_data_LS2014 Man page Source code
import_pop_data_LS2017 Man page Source code
launch_env_dat Man page Source code
mean_fun Man page Source code
plot_glm_map Man page Source code
plot_prior_post Man page Source code
plot_sero_predictions Man page Source code
plot_transmission_intensity Man page Source code
process_serology Man page Source code
setup_modelprior Man page Source code
setup_pseudoprior Man page Source code
transform_into_vc3d Man page Source code
mrc-ide/YFestimation documentation built on Dec. 4, 2019, 4:46 p.m.