fun_calc_pdetect_multi_both: calculate the probability of detection for both models

In mrc-ide/YFestimation: Estimate ecological niche and two transmission models for yellow fever in Africa.

Description

calculate the probability of detection for both models

Usage

fun_calc_pdetect_multi_both(x, seroout, params, dat, t0_vac_africa,
  dim_year, dim_age, p_prop_3d, P_tot_2d, inc_v3d, pop_moments_whole,
  varsin_nc, vc30_agg, pop30_agg, model_type)

Arguments

x	glm covariates
seroout	processed serology data
params	estimated parameters for both serology and GLM from either R0 or Foi model
dat	environmental and occurrence data
t0_vac_africa	time of first vaccination for admins in Africa endemic zone
dim_year	years of interest
dim_age	ages of interest
p_prop_3d	prpoprtion of population in array form
P_tot_2d	total population in 2d form
pop_moments_whole	population moments for all admins
varsin_nc	covariates in use
vc30_agg	vaccine coverage aggregated over time and space for observation period
pop30_agg	population aggregated over time and space for observation period
model_type	either "R0" or "Foi"
inc_vc3d	incidence of vaccination in array form

Value

the probability of detection

mrc-ide/YFestimation documentation built on March 13, 2021, 1:40 p.m.