aggregate: aggregate model runs by vaccination group x vaccine strata

In mrc-ide/gonovax: Deterministic Compartmental Model of Gonorrhoea with Vaccination

aggregate model runs by vaccination group x vaccine strata

Description

aggregate model runs by vaccination group x vaccine strata

Usage

aggregate(
  x,
  what,
  as_incid = FALSE,
  stratum = NULL,
  f = identity,
  stochastic = FALSE,
  ...
)

Arguments

x	a transformed model run output
what	a character string of the cumulative trajectory to transform
as_incid	logical specifying whether to convert to incidence
stratum	an integer denoting the stratum to aggregate over, if NULL aggregation is over all strata
f	function to apply across parameter sets (eg. mean / median)
stochastic	indicates if function is being used on output of stochastic or deterministic version of the trial model, only matters if as_incid = TRUE
...	named arguments to pass to f

Value

a transformed time series / array

mrc-ide/gonovax documentation built on April 17, 2025, 8:33 p.m.