create_uptake_map_xpvwrh: Creates uptake mapping for the branching XPVWRH model where...

In mrc-ide/gonovax: Deterministic Compartmental Model of Gonorrhoea with Vaccination

Creates uptake mapping for the branching XPVWRH model where individuals can move from unvaccinated (X) to vaccinated (V) or partially vaccinated (P) as well as revaccinated from waned (W) to (R) and, and partially vaccinated (P) to fully vaccianted (V). The former reflects the specific indices which are chosen for assigning uptakes.

Description

Creates uptake mapping for the branching XPVWRH model where individuals can move from unvaccinated (X) to vaccinated (V) or partially vaccinated (P) as well as revaccinated from waned (W) to (R) and, and partially vaccinated (P) to fully vaccianted (V). The former reflects the specific indices which are chosen for assigning uptakes.

Usage

create_uptake_map_xpvwrh(
  array,
  r1,
  r2,
  r2_p,
  booster_uptake,
  idx,
  n_diag_rec = 1,
  screening_or_diagnosis
)

Arguments

array	a vaccine map array of dimensions n_group by n_vax by n_vax generated through create_vax_map_branching()
r1	proportion of population offered vaccine only accepting the first dose, becoming partially vaccinated
r2	proportion of the population who accepted the first dose of the vaccine who go on to accept the second dose, becoming fully vaccinated
r2_p	proportion of partially vaccinated individuals who receive a second dose when returning to the clinic due to screening or illness
booster_uptake	proportion of the formerly fully vaccinated, waned population who accept a booster vaccination dose
idx	list containing indices of all X, P, V, W, R & H strata and n_vax through vaccine-protected strata until that protection has waned
n_diag_rec	integer for the number of diagnosis history substrata
screening_or_diagnosis	string indicating screening or diagnosis

Value

an array of the uptakes of same dimensions

mrc-ide/gonovax documentation built on April 17, 2025, 8:33 p.m.