View source: R/uptake_maps.R View source: R/onevax_xpvwrh.R
create_uptake_map_xpvwrh | R Documentation |
Creates uptake mapping for the branching XPVWRH model where individuals can move from unvaccinated (X) to vaccinated (V) or partially vaccinated (P) as well as revaccinated from waned (W) to (R) and, and partially vaccinated (P) to fully vaccianted (V). The former reflects the specific indices which are chosen for assigning uptakes.
Creates uptake mapping for the branching XPVWRH model where individuals can move from unvaccinated (X) to vaccinated (V) or partially vaccinated (P) as well as revaccinated from waned (W) to (R) and, and partially vaccinated (P) to fully vaccianted (V). The former reflects the specific indices which are chosen for assigning uptakes.
create_uptake_map_xpvwrh(
array,
r1,
r2,
r2_p,
booster_uptake,
idx,
n_diag_rec = 1,
screening_or_diagnosis
)
create_uptake_map_xpvwrh(
array,
r1,
r2,
r2_p,
booster_uptake,
idx,
n_diag_rec = 1,
screening_or_diagnosis
)
array |
a vaccine map array of dimensions n_group by n_vax by n_vax generated through create_vax_map_branching() |
r1 |
proportion of population offered vaccine only accepting the first dose, becoming partially vaccinated |
r2 |
proportion of the population who accepted the first dose of the vaccine who go on to accept the second dose, becoming fully vaccinated |
r2_p |
proportion of partially vaccinated individuals who receive a second dose when returning to the clinic due to screening or illness |
booster_uptake |
proportion of the formerly fully vaccinated, waned population who accept a booster vaccination dose |
idx |
list containing indices of all X, P, V, W, R & H strata and n_vax through vaccine-protected strata until that protection has waned |
n_diag_rec |
integer for the number of diagnosis history substrata |
screening_or_diagnosis |
string indicating screening or diagnosis |
an array of the uptakes of same dimensions
an array of the uptakes of same dimensions
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