create_vax_map_branching: Create mapping for movement between strata due to vaccination...

In mrc-ide/gonovax: Deterministic Compartmental Model of Gonorrhoea with Vaccination

Create mapping for movement between strata due to vaccination where vaccination uptake splits off into two types (partial and full) from the naive population (X). Different to create_vax_map as this function specifically maps vbe to V (3) than P(2)

Description

Create mapping for movement between strata due to vaccination where vaccination uptake splits off into two types (partial and full) from the naive population (X). Different to create_vax_map as this function specifically maps vbe to V (3) than P(2)

Usage

create_vax_map_branching(n_vax, v, i_e, i_p, set_vbe = FALSE, idx)

Arguments

n_vax	Integer denoting total number of strata
v	0-1 vector of length two indicating whether activity group should be offered vaccination.
i_e	indices of strata eligible for vaccination
i_p	indices of strata vaccinated and protected
set_vbe	Boolean which indicates that vaccination is occurring at some level of uptake upon entering the model
idx	list containing indices of all X, P, V, W, R & H strata and n_vax through vaccine-protected strata until that protection has waned

Value

an array of the mapping

mrc-ide/gonovax documentation built on April 17, 2025, 8:33 p.m.