create_uptake_map_xvwr: Creates uptake mapping array with dimensions n_group x n_vax...

In mrc-ide/gonovax: Deterministic Compartmental Model of Gonorrhoea with Vaccination

Creates uptake mapping array with dimensions n_group x n_vax x n_vax and assigns the relevant primary uptake and booster uptake values defined by the user.

Description

Creates uptake mapping array with dimensions n_group x n_vax x n_vax and assigns the relevant primary uptake and booster uptake values defined by the user.

Usage

create_uptake_map_xvwr(
  n_group,
  n_vax,
  primary_uptake,
  booster_uptake,
  idx,
  n_diag_rec = 1,
  screening_or_diagnosis
)

Arguments

n_group	scalar indicating number of activity groups
n_vax	scalar indicating number the number of stratum in the model
primary_uptake	proportion of the unvaccinated population who accept primary vaccination
booster_uptake	proportion of the formerly fully vaccinated, waned population who accept a booster vaccination dose
idx	list containing indices of all X, V, W, R strata and n_vax through vaccine-protected strata until that protection has waned
n_diag_rec	integer for the number of diagnosis history substrata
screening_or_diagnosis	string indicating screening or diagnosis

Value

an array of the uptakes with dimensions n_group x n_vax x n_vax

mrc-ide/gonovax documentation built on Dec. 15, 2024, 11:02 a.m.