create_uptake_map: Creates uptake mapping array with dimensions n_group x n_vax...

In mrc-ide/gonovax: Deterministic Compartmental Model of Gonorrhoea with Vaccination

Creates uptake mapping array with dimensions n_group x n_vax x n_vax and assigns the relevant primary uptake and booster uptake values defined by the user.

Description

Creates uptake mapping array with dimensions n_group x n_vax x n_vax and assigns the relevant primary uptake and booster uptake values defined by the user.

Usage

create_uptake_map(
  n_group,
  n_vax,
  primary_uptake,
  booster_uptake,
  i_eligible,
  i_v,
  screening_or_diagnosis
)

Arguments

n_group	scalar indicating number of activity groups
n_vax	scalar indicating number the number of stratum in the model
primary_uptake	proportion of the unvaccinated population who accept primary vaccination
booster_uptake	proportion of the formerly fully vaccinated, waned population who accept a booster vaccination dose
i_eligible	vector of indices of stratum which are eligible for vaccination, of same length as the number of paths from unvaccinated to vaccinated
i_v	vector of indices of stratum which are vaccinated and experience protection
screening_or_diagnosis	string indicating screening or diagnosis

Value

an array of the uptakes with dimensions n_group x n_vax x n_vax

mrc-ide/gonovax documentation built on April 17, 2025, 8:33 p.m.