restart_hes: uses XPVWRH model run in the absence of vaccination or...

In mrc-ide/gonovax: Deterministic Compartmental Model of Gonorrhoea with Vaccination

uses XPVWRH model run in the absence of vaccination or hesitancy. Saves down the number of individuals in each compartment, and moves a given proportion (hes) of them from the X to the H strata to generate new initial conditions in the presence of hesitancy.

Description

uses XPVWRH model run in the absence of vaccination or hesitancy. Saves down the number of individuals in each compartment, and moves a given proportion (hes) of them from the X to the H strata to generate new initial conditions in the presence of hesitancy.

Usage

restart_hes(
  y,
  n_vax = 6,
  hes = 0,
  n_erlang = 1,
  n_diag_rec = 1,
  branching = FALSE
)

Arguments

y	a transformed model run output
n_vax	an integer indicating the number of vaccine compartments, consistent with the input
hes	proportion of population vaccine hesitant
n_erlang	integer giving the number of transitions that need to be made
n_diag_rec	integer for the number of diagnosis history substrata
branching	boolean to denote if xpvwrh branching model in use

Value

A list of initial conditions to restart a model with n_vax vaccination levels, and a populated hestitant stratum in the given proportion 'hes'

mrc-ide/gonovax documentation built on April 17, 2025, 8:33 p.m.