create_waning_map_branching: Create mapping for movement between strata due to vaccine...

In mrc-ide/gonovax: Deterministic Compartmental Model of Gonorrhoea with Vaccination

Create mapping for movement between strata due to vaccine waning where waning from the partially vaccinated stratum (P) moves individuals back to a naive unvaccinated state (X), and waning from fully vaccinated stratum (V) moves individuals into a separate waned stratum (W) Note, this structure is specific to xpvwrh

Description

Create mapping for movement between strata due to vaccine waning where waning from the partially vaccinated stratum (P) moves individuals back to a naive unvaccinated state (X), and waning from fully vaccinated stratum (V) moves individuals into a separate waned stratum (W) Note, this structure is specific to xpvwrh

Usage

create_waning_map_branching(n_vax, i_v, i_w, z, n_erlang = 1, n_diag_rec = 1)

Arguments

n_vax	Integer denoting total number of strata
i_v	indices of strata receiving protection through vaccination
i_w	Scalar in (0, 6) denoting which stratum receives waned vaccinees
z	Scalar denoting rate of waning
n_erlang	integer giving the number of transitions that need to be made through vaccine-protected strata until that protection has waned
n_diag_rec	integer giving number of diagnosis history strata

Value

an array of the mapping

mrc-ide/gonovax documentation built on April 17, 2025, 8:33 p.m.