RunCombat: Function that runs the original Combat script where no model...

In mssm-msf-2019/BiostatsALL:

Description

It accpets an ExpressionSet and returns also an ExpressionSet. If you have a matrix, use RunCombatMat

Usage

RunCombat(eset, g, covariates = NULL)

Arguments

eset:	object of class ExpressionSet
g:	factor defining the batches
covariates:	names of the covariates to be found in pData(eset)

Examples

abatch=ReadAffy()
abatch$Batch<-sapply(protocolData(abatch)$ScanDate,function(x){substr(x,1,10)}
eset<-rma(abatch)
RunCombat(eset,eset$Batch)

mssm-msf-2019/BiostatsALL documentation built on May 22, 2019, 12:16 p.m.