RunCombat_MSF: Function that runs the original Combat script where no model...
In mssm-msf-2019/BiostatsALL:
Description
Usage
Arguments
Examples
Description
See ComBat_MSF. It accepts an ExpressionSet and returns also an ExpressionSet.
Usage
1
RunCombat_MSF(eset, g, covariates = NULL)
Arguments
eset:
object of class ExpressionSet
g:
factor defining the batches
covariates:
names of the covariates to be found in pData(eset)
Examples
1
2
3
4
abatch=ReadAffy()
abatch$Batch<-sapply(protocolData(abatch)$ScanDate,function(x){substr(x,1,10)}
eset<-rma(abatch)
RunCombat_MSF(eset,eset$Batch)
mssm-msf-2019/BiostatsALL documentation built on May 22, 2019, 12:16 p.m.
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Description Usage Arguments Examples
Description
See ComBat_MSF. It accepts an ExpressionSet and returns also an ExpressionSet.
Usage
1 | RunCombat_MSF(eset, g, covariates = NULL)
|
Arguments
eset: |
object of class ExpressionSet |
g: |
factor defining the batches |
covariates: |
names of the covariates to be found in pData(eset) |
Examples
1 2 3 4 | abatch=ReadAffy()
abatch$Batch<-sapply(protocolData(abatch)$ScanDate,function(x){substr(x,1,10)}
eset<-rma(abatch)
RunCombat_MSF(eset,eset$Batch)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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