processGMT: Function for parsing a GMT gene set list
In mssm-msf-2019/BiostatsALL:
Description
Usage
Arguments
Examples
Description
This function takes a GMT gene set list (from "readGmt") as input, and outputs a list of gene sets, with names being the geneset.names, and values the corresponding genesets. Note this function also works on a GSA .gmt file object.
Usage
1
processGMT(gene_sets, trim_snam = F)
Arguments
gene_sets
Name of geneset list that was created by "readGmt"
trim_snam
TRUE/FALSE if the geneset.names should be trimmed using "str_trim" from the "stringr" package. Defaults to FALSE.
Examples
1
jkr.symbol <- processGMT(jkr.list)
mssm-msf-2019/BiostatsALL documentation built on May 22, 2019, 12:16 p.m.
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Description Usage Arguments Examples
Description
This function takes a GMT gene set list (from "readGmt") as input, and outputs a list of gene sets, with names being the geneset.names, and values the corresponding genesets. Note this function also works on a GSA .gmt file object.
Usage
1 | processGMT(gene_sets, trim_snam = F)
|
Arguments
gene_sets |
Name of geneset list that was created by "readGmt" |
trim_snam |
TRUE/FALSE if the geneset.names should be trimmed using "str_trim" from the "stringr" package. Defaults to FALSE. |
Examples
1 | jkr.symbol <- processGMT(jkr.list)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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