readGmt2: Function for reading a GMT file of gene set collection
In mssm-msf-2019/BiostatsALL:
Description
Usage
Arguments
Examples
Description
This function reads a gene set collection GMT file, and stores the output in a list of genesets, geneset.names, and geneset.descriptions. This version is adapted from the GSA package by Robert Tibshirani, with some modifications with respect to the possible empty cells, making it more efficient.
Usage
1
readGmt2(fname)
Arguments
fname
File name of the .gmt file. The format of the file should be: 1.Column=Geneset Name ; 2.Column=Geneset Description ; 3.-N.Column=GENE SYMBOLS
Examples
1
jkr.list <- readGmt(fname = "./KruegerSYMBOL.gmt")
mssm-msf-2019/BiostatsALL documentation built on May 22, 2019, 12:16 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Examples
Description
This function reads a gene set collection GMT file, and stores the output in a list of genesets, geneset.names, and geneset.descriptions. This version is adapted from the GSA package by Robert Tibshirani, with some modifications with respect to the possible empty cells, making it more efficient.
Usage
1 | readGmt2(fname)
|
Arguments
fname |
File name of the .gmt file. The format of the file should be: 1.Column=Geneset Name ; 2.Column=Geneset Description ; 3.-N.Column=GENE SYMBOLS |
Examples
1 | jkr.list <- readGmt(fname = "./KruegerSYMBOL.gmt")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.