library(devtools)
devtools::load_all('/imppc/labs/lplab/share/marc/repos/ergWgsTools')
args <- commandArgs(trailingOnly = TRUE)
tumor <- args[1]
normal <- args[2]
output <- args[3]
# mutect2 calling
mutect2_gatk3_8(tumor=tumor,
normal=normal,
output=output)
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