Man pages for mzinkgraf/fastOC
Co-expression network analysis across multiple species
| checkGeneMetaFormat | Check GeneMeta format |
| color.bar | Plot heatmap color scale |
| createGeneMeta | Create gene metadata object |
| filterCommunityAssign | Filter Louvain community assignemnts |
| filterVariance | Filter expression based on variance |
| getEdgelist | Create an edgelist from rpkm expression values |
| getOrthoWeights | Convert orthologous relationships to edgelist |
| louvain | Louvain community detection |
| multiSppHclust | Hierarchical clustering of gene co-appearance in Louvain... |
| multiSppModules | Identify modules with high co-appearance |
| multMerge | Combine multiple files |
| multMergeHTseq | Combine multiple htseq files using merge |
| parseInParanoid | Parse inParanoid table |
| plot_MultiSpp | Plot MultiSpp co-appearance matrix |
| weighted2rankList | Correlation matrix to list of maximum |
