checkGeneMetaFormat | Check GeneMeta format |
color.bar | Plot heatmap color scale |
createGeneMeta | Create gene metadata object |
filterCommunityAssign | Filter Louvain community assignemnts |
filterVariance | Filter expression based on variance |
getEdgelist | Create an edgelist from rpkm expression values |
getOrthoWeights | Convert orthologous relationships to edgelist |
louvain | Louvain community detection |
multiSppHclust | Hierarchical clustering of gene co-appearance in Louvain... |
multiSppModules | Identify modules with high co-appearance |
multMerge | Combine multiple files |
multMergeHTseq | Combine multiple htseq files using merge |
parseInParanoid | Parse inParanoid table |
plot_MultiSpp | Plot MultiSpp co-appearance matrix |
weighted2rankList | Correlation matrix to list of maximum |
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