parseInParanoid: Parse inParanoid table
In mzinkgraf/fastOC: Co-expression network analysis across multiple species

Convert an inParanoid table format and output a table of ortholog edges

1	parseInParanoid(MetaDataInParanoid, outDir = ".")

`MetaDataInParanoid`	Provide a data frame where each row provides the meta data for a single inParanoid run. The resulting data frame must have 3 columns: 1) file path to table.inparanoid_output 2) Species A alias and 3) Species B alias
`outDir`	Directory to write files

The function will convert the table.inParanoid format to a two column edgelist and print the results to a text file SppA_SppB_orthologs.txt

mzinkgraf/fastOC documentation built on May 13, 2019, 3:01 a.m.