plot_MultiSpp: Plot MultiSpp co-appearance matrix
In mzinkgraf/fastOC: Co-expression network analysis across multiple species

Description Usage Arguments Author(s) See Also Examples

Plot co-appearance heatmap of co-expression network generated across multiple species

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plot_MultiSpp(GeneMeta,order,CA_keep,sb=12, remove_0=TRUE,
    text_rotate=NULL, lwd=0.5, cex=0.2,
    my_palette=colorRampPalette(c("white", "lightyellow", "red","black"))(n = 100))

`GeneMeta`	Data frame that contains the project metadata. See createGeneMeta
`order`	The order in which genes should be plotted.
`CA_keep`	Sparse matrix of louvain community assignments generated from many runs of `louvain`
`sb`	An integer specifying the increment of the sequence to plot. Example plots every 12th gene in the order.
`remove_0`	A logical value indicating if the unclusterable genes should be plotted.
`text_rotate`	Angle of module labels.
`lwd`	Line weight
`cex`	Font proportion
`my_palette`	Specify your own color ramp for the heatmap

Matthew Zinkgraf, Matthew.Zinkgraf@wwu.edu

cluster_louvain

data("GeneMeta")
data("occurance")
data("MultiSppTrees")
plot_MultiSpp(GeneMeta = GeneMeta, order = MultiSpp_trees$order,
      sb=12, CA_keep = occurance, remove_0 = F, lwd = 1, cex = 0.5)