multMergeHTseq: Combine multiple htseq files using merge

Description Usage Arguments Author(s) See Also

Description

Read and combine tab deliminted htseq results files from a folder using the merge function.

Usage

1
2
multMergeHTseq(mypath, pattern="*\\.htseq", byY="gene",
    RegEx="(\\w+)\\.htseq\\.txt", Replace="\\1", sep="\t")

Arguments

mypath

Path to folder.

pattern

Unique pattern that matches files to be read and merged using Perl style regular expressions.

byY

Column name that should be used in the merge function.

RegEx

Perl style regular expression that matches pattern in the filename. Used to extract library name from filename. Example "(\\w+)\\.htseq\\.txt" matches Library1 in filename Library1.htseq.txt

Replace

Perl style replacement. Default = "\\1"

sep

The field separator character.

Author(s)

Matthew Zinkgraf, Matthew.Zinkgraf@wwu.edu

See Also

list.files


mzinkgraf/fastOC documentation built on May 13, 2019, 3:01 a.m.