multiSppHclust: Hierarchical clustering of gene co-appearance in Louvain...

In mzinkgraf/fastOC: Co-expression network analysis across multiple species

Description

For each species calculate a co-appearance matrix representing how often genes are assigned to the same Louvain communities and perform hierarchical clustering to determine which genes have similar co-appearance.

Usage

multiSppHclust(occurance, nRuns, GeneMeta)

Arguments

occurance	Sparse matrix that contain the presence (1) and absence (0) of each gene in each Louvain community.
nRuns	Integer specifying the number of Louvain runs.
GeneMeta	Data frame that contains the project metadata. See createGeneMeta

Author(s)

Matthew Zinkgraf, [e-mail]

Examples

data("GeneMeta")
data("occurance")
nRuns = 100
MultiSpp_trees <- multiSppHclust(occurance, nRuns, GeneMeta)

mzinkgraf/fastOC documentation built on May 13, 2019, 3:01 a.m.