Description Usage Arguments Author(s) References See Also Examples
Run the Louvain clustering method multiple times on a user defined set of edges. For each run, the edgelist is shuffled so the louvain method begins at a random starting point in the network.
1 | louvain(GeneMeta, edgelist, nruns, nThreads = 1)
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GeneMeta |
Data frame that contains the project metadata. See createGeneMeta |
edgelist |
A data frame that contains three columns. The first two columns define the edges between gene_A and gene_B. Gene names must be converted to integer values. The third column defines the numeric edge weight. |
nruns |
An interger defining the number of runs. |
nThreads |
Integer specifying number of cores to be used by doParallel. Default = 1 |
Matthew Zinkgraf, Matthew.Zinkgraf@wwu.edu
Vincent D. Blondel, Jean-Loup Guillaume, Renaud Lambiotte, Etienne Lefebvre. 2008. Fast unfolding of communities in large networks. J. Stat. Mech. P10008
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