filterCommunityAssign: Filter Louvain community assignemnts

In mzinkgraf/fastOC: Co-expression network analysis across multiple species

Description

This function removes communities from the sparse matrix that have a minimum number of gene members

Usage

filterCommunityAssign(results, nRuns=NULL, minMem=10, maxMem=NULL)

Arguments

results	Data frame containing the community assignments for each genes and contains nRuns+1 columns. The first column contains an integer referencing the GeneMeta ID
nRuns	Number of runs used in the Louvain community assignment. Default is to calculate from results table.
minMem	Minimum number of genes in a community to be considered significant. Default = 10
maxMem	Maximum number of genes in a community to be considered significant. Default = NULL

Value

Returns a sparse matrix containing to occurance of each gene in each community. 1 = present and 0 = absent

Author(s)

Matthew Zinkgraf, [e-mail]

mzinkgraf/fastOC documentation built on May 13, 2019, 3:01 a.m.