multiSppModules: Identify modules with high co-appearance
In mzinkgraf/fastOC: Co-expression network analysis across multiple species
Description
Usage
Arguments
Author(s)
Description
Use cutreeDynamic to identify gene modules that have high co-appearance.
Usage
1
multiSppModules(multiSpp_results, GeneMeta, minModuleSize, cut)
Arguments
multiSpp_results
A list object containing the gene order and hclust dendrograms for each species. See multiSppHclust
GeneMeta
Data frame that contains the project metadata. See createGeneMeta
minModuleSize
A vector containing the minimum module size to be used for each species in the data set.
cut
A vector containing the cut height to be used for species in the data set
Author(s)
Matthew Zinkgraf, Matthew.Zinkgraf@wwu.edu
mzinkgraf/fastOC documentation built on May 13, 2019, 3:01 a.m.
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Description Usage Arguments Author(s)
Description
Use cutreeDynamic to identify gene modules that have high co-appearance.
Usage
1 | multiSppModules(multiSpp_results, GeneMeta, minModuleSize, cut)
|
Arguments
multiSpp_results |
A list object containing the gene order and hclust dendrograms for each species. See multiSppHclust |
GeneMeta |
Data frame that contains the project metadata. See createGeneMeta |
minModuleSize |
A vector containing the minimum module size to be used for each species in the data set. |
cut |
A vector containing the cut height to be used for species in the data set |
Author(s)
Matthew Zinkgraf, Matthew.Zinkgraf@wwu.edu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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