API for naikai/sake
Single-cell RNA-Seq Analysis and Klustering Evaluation
| Global functions | |
|---|---|
| NetConnectivity | Man page Source code |
| Usoskin | Man page |
| affy_probe_to_gene_symbol | Man page Source code |
| assign_label_cex | Man page Source code |
| cal_entropy | Man page Source code |
| centroid_classify | Man page Source code |
| clean_iterNMF | Man page |
| clust_by_hier | Man page |
| clust_silhouette | Man page |
| comp_module_genelist | Man page Source code |
| compare_group | Man page Source code |
| compare_groups_stats | Man page Source code |
| connect_gap_modules | Man page Source code |
| corModule | Source code |
| corModuleUI | Man page Source code |
| cor_mtest | Man page Source code |
| create.brewer.color | Man page Source code |
| create.manual.color | Man page Source code |
| create_centroid | Man page Source code |
| def_net_module2 | Man page Source code |
| def_net_modules | Man page Source code |
| deseq_norm | Man page Source code |
| detect_genecnt_id | Source code |
| detect_genecnt_platform | Man page Source code |
| ext_gene_function | Man page |
| extract_data_by_mad | Man page |
| extract_data_by_math | Man page |
| feature | Source code |
| featureUI | Source code |
| gene_convert_human_to_mouse | Man page |
| gene_convert_mouse_to_human | Man page |
| get_ClaNC_group | Man page Source code |
| getcentroid | Man page |
| heatmap.3 | Man page Source code |
| hello | Man page |
| is.whole | Man page Source code |
| iter_nmf | Man page Source code |
| load_genelist | Man page Source code |
| load_geneset | Man page Source code |
| module_finder | Man page Source code |
| multiplot | Man page Source code |
| mutual_info_from_confmatrix | Man page Source code |
| mutual_info_from_vector | Man page Source code |
| my.write.matrix | Man page |
| myHeatmap.3 | Man page |
| myNMF | Man page Source code |
| myboxplot | Man page Source code |
| myd3Heatmap | Man page |
| myfread.table | Man page Source code |
| name_to_color | Man page Source code |
| network | Source code |
| networkUI | Source code |
| nmf_estim_plot | Man page Source code |
| nmf_extract_feature | Man page Source code |
| nmf_extract_group | Man page Source code |
| nmf_plot | Man page Source code |
| nmf_select_best_k | Man page Source code |
| nmf_silhouette_plot | Man page Source code |
| nmf_summary | Man page Source code |
| nmfres | Source code |
| nmfresUI | Source code |
| norm_factors | Man page |
| parse_tsne_res | Man page Source code |
| pcaplot | Man page Source code |
| plot_gene_expression | Man page |
| plot_modules | Man page Source code |
| plot_tsne | Man page Source code |
| predict_from_centroid | Man page Source code |
| preprocessNetCon | Man page Source code |
| reorderfun | Man page Source code |
| rmv_constant_0 | Man page |
| run_CV | Man page Source code |
| run_ClaNC | Man page Source code |
| run_CoExpression | Man page Source code |
| run_DESeq2 | Man page Source code |
| run_icash | Man page Source code |
| run_tsne | Man page Source code |
| sake | Man page |
| sake-package | Man page |
| scale_data | Man page |
| screenshot_plotly | Man page Source code |
| select_n_pct | Man page |
| select_top_n | Man page |
| server | Source code |
| simpleCap | Man page |
| summarize_module2 | Man page Source code |
| top_genes | Man page |
| vst | Man page |
| weighted.silhouette | Man page Source code |
| wgcna_ext_hubgenes | Man page Source code |
