augmentAggregate: Augment PlateData with Aggregates

In nbenn/singleCellFeatures: Analyze single cell features stored in an openBIS instance

Description

Given a PlateData, aggregate the selected features within wells or the whole plate with the supplied function (examples include mean, median, sum, var, mad, etc.)

Usage

augmentAggregate(x, ...)

Arguments

x	The PlateData object of interest.
level	A string, either "well" or "plate", indicaing the level at which to aggregate.
neighbors	Logical, whether to include direct neighbors for well level aggregation.
features	A (list) of regular expressions used for selecting the features to include.
drop	A (list) of regular expressions used for removing features from the previously compiled list.
aggregate	The function used to aggregate data within wells.

Value

An augmented version of the input object.

Examples

data <- PlateData(PlateLocation("J101-2C"))
aug  <- augmentAggregate(data)

nbenn/singleCellFeatures documentation built on May 23, 2019, 12:24 p.m.