API for nbenn/singleCellFeatures
Analyze single cell features stored in an openBIS instance

Global functions
ImageData Man page Source code
MatData Man page Source code
PlateAggregate Man page Source code
PlateData Man page Source code
PlateLocation Man page Source code
PlateMetadata Man page Source code
WellData Man page Source code
WellLocation Man page Source code
WellMetadata Man page Source code
analyzeSeparation Man page Source code
augmentAggregate Man page Source code
augmentAggregate.PlateData Source code
augmentAggregate.WellData Source code
augmentAggregate.default Source code
augmentBscore Man page Source code
augmentBscore.PlateData Source code
augmentBscore.default Source code
augmentCordinateFeatures Man page Source code
augmentCordinateFeatures.ImageData Source code
augmentCordinateFeatures.PlateData Source code
augmentCordinateFeatures.WellData Source code
augmentCordinateFeatures.default Source code
augmentImageLocation Man page Source code
augmentImageLocation.ImageData Source code
augmentImageLocation.PlateData Source code
augmentImageLocation.WellData Source code
augmentImageLocation.default Source code
augmentMars Man page Source code
augmentMars.PlateData Source code
augmentMars.default Source code
buildPrototypeHelper Source code
checkCompletenessFeature Man page Source code
checkCompletenessFeature.Data Source code
checkCompletenessFeature.default Source code
checkCompletenessImage Man page Source code
checkCompletenessImage.PlateData Source code
checkCompletenessImage.WellData Source code
checkCompletenessImage.default Source code
checkCompletenessWell Man page Source code
checkCompletenessWell.PlateData Source code
checkCompletenessWell.default Source code
checkConsistency Man page Source code
checkConsistency.PlateData Source code
checkConsistency.WellData Source code
checkConsistency.default Source code
cleanData Man page Source code
cleanData.ImageData Source code
cleanData.PlateData Source code
cleanData.WellData Source code
cleanData.default Source code
compareModeltoTruth Man page Source code
configGet Man page Source code
configInit Man page Source code
configPathGet Man page Source code
configPathSet Man page Source code
configSet Man page Source code
convertToPlateLocation Man page Source code
convertToPlateLocation.Data Source code
convertToPlateLocation.DataLocation Source code
convertToPlateLocation.PlateAggregate Source code
convertToPlateLocation.default Source code
convertToWellLocation Man page Source code
convertToWellLocation.WellData Source code
convertToWellLocation.default Source code
deleteAllMetadataCaches Man page Source code
deleteAllWellCaches Man page Source code
dowloadFeatureHelper Source code
extractCells Man page Source code
extractCells.ImageData Source code
extractCells.PlateData Source code
extractCells.WellData Source code
extractCells.default Source code
extractFeatures Man page Source code
extractFeatures.ImageData Source code
extractFeatures.MatData Source code
extractFeatures.PlateData Source code
extractFeatures.WellData Source code
extractFeatures.default Source code
extractFeaturesMatchingHelper Source code
extractImages Man page Source code
extractImages.PlateData Source code
extractImages.WellData Source code
extractImages.default Source code
extractWells Man page Source code
extractWells.PlateData Source code
extractWells.default Source code
findFeatureHelper Source code
findPlates Man page Source code
findWells Man page Source code
getAllLocalPlates Man page Source code
getBarcode Man page Source code
getBarcode.DataLocation Source code
getBarcode.ImageData Source code
getBarcode.MatData Source code
getBarcode.PlateData Source code
getBarcode.WellData Source code
getBarcode.default Source code
getCacheFilenameData Man page Source code
getCacheFilenameData.PlateLocation Source code
getCacheFilenameData.WellLocation Source code
getCacheFilenameData.default Source code
getCacheFilenameMeta Man page Source code
getCacheFilenameMeta.DataLocation Source code
getCacheFilenameMeta.default Source code
getFeatureLocationInStructure Source code
getFeatureNames Man page Source code
getFeatureNames.ImageData Source code
getFeatureNames.MatData Source code
getFeatureNames.PlateData Source code
getFeatureNames.WellData Source code
getFeatureNames.default Source code
getImageStructure Source code
getLocalPath Man page Source code
getLocalPath.DataLocation Source code
getLocalPath.default Source code
getNoImgPerWell Man page Source code
getNoImgPerWell.ImageData Source code
getNoImgPerWell.MatData Source code
getNoImgPerWell.PlateData Source code
getNoImgPerWell.WellData Source code
getNoImgPerWell.default Source code
getNumCores Man page Source code
getOpenBisPath Man page Source code
getOpenBisPath.DataLocation Source code
getOpenBisPath.default Source code
getPathogen Man page Source code
getPathogen.DataLocation Source code
getPathogen.WellData Source code
getPathogen.WellMetadata Source code
getPathogen.default Source code
getSingleCellData Man page Source code
getWellIndex1D Man page Source code
getWellIndex2D Man page Source code
getWellName Man page Source code
getWellName.ImageData Source code
getWellName.WellData Source code
getWellName.WellLocation Source code
getWellName.default Source code
getWells Source code
glmBootstrapStability Man page Source code
makeFeatureCompatible Man page Source code
makeRankFull Man page Source code
meltData Man page Source code
meltData.ImageData Source code
meltData.PlateData Source code
meltData.WellData Source code
meltData.default Source code
moveFeatures Man page Source code
normalizeData Man page Source code
normalizeData.ImageData Source code
normalizeData.PlateData Source code
normalizeData.WellData Source code
normalizeData.default Source code
normalizeMoltenData Man page Source code
onAttach Source code
onLoad Source code
plateBoxplot Man page Source code
plateHeatmap Man page Source code
prepareDataforGlm Man page Source code
printPlateSet Source code
processContents Source code
processExperiments Source code
processPathogens Source code
processPlates Source code
processSingleCellDataPlate Man page Source code
processWellCols Source code
processWellNames Source code
processWellRows Source code
processWellTypes Source code
readMatFeatureHelper Source code
readRDSMC Man page Source code
rebuildAllMatDataCaches Man page Source code
rebuildCache Man page Source code
rebuildCache.MatData Source code
rebuildCache.default Source code
reloadSingleCellFeatures Man page Source code
saveRDSMC Man page Source code
saveToCache Man page Source code
saveToCache.MatData Source code
saveToCache.PlateAggregate Source code
saveToCache.WellData Source code
saveToCache.default Source code
size Man page Source code
updateDatabaseFeatures Man page Source code
updateDatabasePlate Man page Source code
updateDatabaseWells Man page Source code
wellDatabaseCoverage Man page Source code
nbenn/singleCellFeatures documentation built on May 23, 2017, 11:31 a.m.