getSingleCellData: Read all single cell features for wells/plates

In nbenn/singleCellFeatures: Analyze single cell features stored in an openBIS instance

Description

Read all available single cell feature data for multiple wells and/or multiple plates.

Usage

getSingleCellData(locations, select.features = NULL, drop.features = NULL,
  select.images = NULL)

Arguments

locations	A list of PlateLocation/WellLocation objects for which the data is to be returned.
select.features	A vector of strings that are matched with features to be kept.
drop.features	A vector of strings that are matched with features to be dropped.
select.images	A vector of image indices (1:9) indicating which images to return for each well.

Value

If a single PlateLocation/WellLocation is specified as location input, the corresponding Data object is returned. For a list of PlateLocation/WellLocation objects, a list with well/plate data is returned.

Examples

plate1 <- PlateLocation("J101-2C")
mtor   <- findPlateWellsFromGene("MTOR", "brucella-dp-k[1-3]")
plate2 <- PlateLocation("J101-2L")

locations <- c(list(plate1, plate2), mtor)

data <- getSingleCellData(locations)

nbenn/singleCellFeatures documentation built on May 23, 2019, 12:24 p.m.