findPlates: Find PlateLocations

In nbenn/singleCellFeatures: Analyze single cell features stored in an openBIS instance

Description

Find all plates using the following set of parameters:

Usage

findPlates(pathogens = NULL, experiments = NULL, plates = NULL,
  well.types = NULL, contents = NULL, id.openBIS = NULL, id.infx = NULL,
  name = NULL, verbose = FALSE)

Arguments

pathogens	Narrow down the results by selecting pathogens (exact, matches, ignoring case).
experiments	Name of the experiment to be considered (regular expression, case insensitive).
plates	A vector of regular expressions for plates.
well.types	A vector of regular expressions that is matched with the well.types column in well databases.
contents	This vector of strings/integers is matched against the three well database columns id.openBIS, id.infx and name via case insensitive regular expressions. In case it is specified, the next three parameters are ignored.
id.openBIS	A vector of regular expressions that is matched against the id.openBIS column.
id.infx	A vector of regular expressions that is matched against the id.infx column.
name	A vector of regular expressions that is matched against the name column.

Value

A list of PlateLocation objects.

Examples

set1 <- findPlates(contents="MTOR", experiments="brucella-du-k")
set2 <- findPlates(contents=2475, experiments="brucella-au-k[1-3]")
set3 <- findPlates(contents="SCRAMBLED", experiments="brucella-du-k")

nbenn/singleCellFeatures documentation built on May 23, 2019, 12:24 p.m.